SMTL ID : 1fd0.1

ISOTYPE SELECTIVITY OF THE HUMAN RETINOIC ACID NUCLEAR RECEPTOR HRAR: THE COMPLEX WITH THE RARGAMMA-SELECTIVE RETINOID SR11254

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x 254: 6-[HYDROXYIMINO-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALEN-2-YL)-METHYL]-NAPHTALENE-2-CARBOXYLIC ACID(Non-covalent)

254.1: 21 residues within 4Å: Chain A: F.19, W.45, F.48, L.51, A.52, C.55, L.86, L.89, M.90, I.93, R.96, F.106, S.107, G.121, F.122, G.211, A.215, L.218, I.230, M.233, L.234 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:W.45, A:F.48, A:F.48, A:A.52, A:L.86, A:L.89, A:L.89, A:I.93, A:F.106, A:F.106, A:F.122, A:A.215, A:L.218, A:L.234 Hydrogen bonds: A:S.107 Water bridges: A:R.92 Salt bridges: A:R.96 pi-Stacking: A:F.48

1 x LMU: DODECYL-ALPHA-D-MALTOSIDE(Non-covalent)

LMU.2: 9 residues within 4Å: Chain A: I.57, K.58, E.61, L.81, K.82, C.85, L.229, E.232, M.233 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.229, A:E.232, A:M.233 Hydrogen bonds: A:K.58, A:K.58, A:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klaholz, B. et al., C-H...O hydrogen bonds in the nuclear receptor RARgamma--a potential tool for drug selectivity. Structure (2002)

Release Date

2002-09-27

Peptides

RETINOIC ACID RECEPTOR GAMMA-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RETINOIC ACID RECEPTOR GAMMA-1

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