SMTL ID : 1fdo.1

OXIDIZED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 12 residues within 4Å: Chain A: C.8, Y.10, C.11, S.13, G.14, C.15, L.41, C.42, K.44, G.45, P.182, I.183 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.8, A:C.11, A:C.15, A:C.42

2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)

MGD.2: 33 residues within 4Å: Chain A: R.110, G.111, T.112, V.139, U.140, M.297, Q.301, Q.335, G.402, E.403, D.404, T.408, Q.428, D.429, I.430, F.431, T.433, S.445, T.446, H.451, D.478, T.579, R.581, S.587, C.588, S.590, Y.654, C.661, N.662, Y.678, K.679 Ligands: MGD.3, 6MO.4 31 PLIP interactions: 31 interactions with chain A Hydrogen bonds: A:G.111, A:Q.301, A:Q.335, A:G.402, A:D.404, A:T.408, A:Q.428, A:I.430, A:S.445, A:S.445, A:T.579, A:T.579, A:T.579, A:R.581, A:C.588, A:S.590, A:S.590, A:Y.654, A:N.662 Water bridges: A:T.112, A:T.112, A:T.408, A:T.408, A:D.429, A:T.433, A:S.590 Salt bridges: A:R.110, A:D.429, A:D.478 pi-Stacking: A:Y.654, A:Y.678 MGD.3: 37 residues within 4Å: Chain A: C.11, K.44, U.140, F.173, G.174, Y.175, N.176, D.179, S.180, C.201, D.202, P.203, R.204, I.206, L.218, N.220, G.221, N.223, G.296, M.297, G.298, F.302, G.334, Q.335, S.578, V.580, R.581, E.582, V.583, H.585, Y.586, S.587, Y.651, Y.654, K.679 Ligands: MGD.2, 6MO.4 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:K.44, A:N.176, A:D.179, A:S.180, A:S.180, A:S.180, A:C.201, A:R.204, A:R.204, A:G.221, A:N.223, A:N.223, A:M.297, A:R.581, A:H.585, A:S.587, A:Y.654 Salt bridges: A:D.202, A:R.581, A:R.581, A:K.679

1 x 6MO: MOLYBDENUM(VI) ION(Non-covalent)

6MO.4: 3 residues within 4Å: Chain A: U.140 Ligands: MGD.2, MGD.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyington, J.C. et al., Crystal structure of formate dehydrogenase H: catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster. Science (1997)

Release Date

1997-08-20

Peptides

FORMATE DEHYDROGENASE H: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FORMATE DEHYDROGENASE H

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