SMTL ID : 1fdz.1

N-ACETYLNEURAMINATE LYASE IN COMPLEX WITH PYRUVATE VIA BOROHYDRIDE REDUCTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x PYR: PYRUVIC ACID(Covalent)

PYR.1: 9 residues within 4Å: Chain A: A.11, Y.43, G.46, S.47, T.48, Y.137, K.165, T.167, I.206 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.43, A:K.165, A:I.206 Hydrogen bonds: A:S.47, A:T.48 Salt bridges: A:K.165 PYR.2: 8 residues within 4Å: Chain B: A.11, Y.43, G.46, S.47, T.48, Y.137, K.165, I.206 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.11, B:Y.43, B:K.165, B:I.206 Hydrogen bonds: B:S.47, B:T.48, B:T.48, B:Y.137 Salt bridges: B:K.165 PYR.3: 6 residues within 4Å: Chain C: Y.43, G.46, S.47, T.48, Y.137, K.165 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:K.165 Hydrogen bonds: C:S.47, C:T.48, C:Y.137 Salt bridges: C:K.165 PYR.4: 9 residues within 4Å: Chain D: A.11, Y.43, G.46, S.47, T.48, Y.137, K.165, I.206, G.207 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:A.11, D:K.165 Hydrogen bonds: D:S.47, D:T.48, D:T.48 Salt bridges: D:K.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lawrence, M.C. et al., Structure and mechanism of a sub-family of enzymes related to N-acetylneuraminate lyase. J.Mol.Biol. (1997)

Release Date

1997-10-22

Peptides

N-ACETYLNEURAMINATE LYASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

N-ACETYLNEURAMINATE LYASE

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