SMTL ID : 1fiw.1

THREE-DIMENSIONAL STRUCTURE OF BETA-ACROSIN FROM RAM SPERMATOZOA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- FUL: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUL.1: 6 residues within 4Å: Chain A: N.169, N.175, G.176, I.178, R.179, S.180 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.175

2 x PBZ: P-AMINO BENZAMIDINE(Non-covalent)

PBZ.2: 12 residues within 4Å: Chain A: D.193, T.194, C.195, Q.196, S.199, T.219, S.220, W.221, G.222, G.224, C.225, G.232 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.219 Hydrogen bonds: A:D.193, A:D.193, A:T.194, A:T.194, A:S.199 Water bridges: A:G.197, A:G.222 PBZ.3: 6 residues within 4Å: Chain A: V.55, T.56, Y.83, V.84, E.85, T.108 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.55, A:T.56 Hydrogen bonds: A:E.85, A:E.85 Water bridges: A:R.59 pi-Stacking: A:Y.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tranter, R. et al., Effector sites in the three-dimensional structure of mammalian sperm beta-acrosin. Structure Fold.Des. (2000)

Release Date

2000-11-08

Peptides

BETA-ACROSIN HEAVY CHAIN: A
BETA-ACROSIN LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

BETA-ACROSIN HEAVY CHAIN

BETA-ACROSIN LIGHT CHAIN