SMTL ID : 1fj6.1

FRUCTOSE-1,6-BISPHOSPHATASE (MUTANT Y57W) PRODUCT/ZN COMPLEX (R-STATE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 16 residues within 4Å: Chain A: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain B: R.243 Ligands: PO4.6 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.121, A:G.122, A:S.123, A:N.212, A:Y.215, A:Y.244, A:M.248, A:Y.264, A:Y.264, A:K.274 Water bridges: A:S.124, A:Y.215, A:Y.264 Salt bridges: A:K.274, B:R.243 F6P.7: 16 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: PO4.12 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:S.123, B:N.212, B:Y.215, B:Y.244, B:M.248, B:Y.264, B:Y.264, B:K.274 Water bridges: B:S.124, B:Y.215, B:Y.264 Salt bridges: B:K.274, A:R.243 F6P.13: 16 residues within 4Å: Chain C: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain D: R.243 Ligands: PO4.18 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:S.123, C:N.212, C:Y.244, C:M.248, C:Y.264, C:K.274 Water bridges: C:S.124, C:Y.215, C:Y.215 Salt bridges: C:K.274, D:R.243 F6P.19: 16 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: PO4.24 13 PLIP interactions: 12 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.121, D:G.122, D:S.123, D:N.212, D:Y.244, D:M.248, D:Y.264, D:K.274 Water bridges: D:S.124, D:Y.215, D:Y.215 Salt bridges: D:K.274, C:R.243

12 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: E.97, D.118, L.120, D.121 Ligands: ZN.3, ZN.4, PO4.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.97, A:D.118, A:L.120 ZN.3: 7 residues within 4Å: Chain A: E.97, D.118, D.121, R.276, E.280 Ligands: ZN.2, PO4.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.118, A:D.121, A:E.280 ZN.4: 7 residues within 4Å: Chain A: N.64, D.68, E.97, E.98, R.276 Ligands: ZN.2, PO4.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.68, A:E.97 ZN.8: 7 residues within 4Å: Chain B: E.97, D.118, L.120, D.121 Ligands: ZN.9, ZN.10, PO4.12 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.97, B:D.118, B:L.120 ZN.9: 7 residues within 4Å: Chain B: E.97, D.118, D.121, R.276, E.280 Ligands: ZN.8, PO4.12 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.118, B:D.121, B:E.280 ZN.10: 7 residues within 4Å: Chain B: N.64, D.68, E.97, E.98, R.276 Ligands: ZN.8, PO4.12 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.68, B:E.97 ZN.14: 7 residues within 4Å: Chain C: E.97, D.118, L.120, D.121 Ligands: ZN.15, ZN.16, PO4.18 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.97, C:D.118, C:L.120 ZN.15: 7 residues within 4Å: Chain C: E.97, D.118, D.121, R.276, E.280 Ligands: ZN.14, PO4.18 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.118, C:D.121, C:E.280 ZN.16: 7 residues within 4Å: Chain C: N.64, D.68, E.97, E.98, R.276 Ligands: ZN.14, PO4.18 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.68, C:E.97 ZN.20: 7 residues within 4Å: Chain D: E.97, D.118, L.120, D.121 Ligands: ZN.21, ZN.22, PO4.24 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.97, D:D.118, D:L.120 ZN.21: 7 residues within 4Å: Chain D: E.97, D.118, D.121, R.276, E.280 Ligands: ZN.20, PO4.24 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.118, D:D.121, D:E.280 ZN.22: 7 residues within 4Å: Chain D: N.64, D.68, E.97, E.98, R.276 Ligands: ZN.20, PO4.24 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.68, D:E.97

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 7 residues within 4Å: Chain A: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:T.27, A:G.28, A:M.30, A:Y.113 Salt bridges: A:K.112 PO4.6: 13 residues within 4Å: Chain A: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.1, ZN.2, ZN.3, ZN.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.74, A:G.122, A:S.123 Salt bridges: A:R.276 PO4.11: 7 residues within 4Å: Chain B: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:T.27, B:G.28, B:M.30, B:Y.113 Salt bridges: B:K.112 PO4.12: 13 residues within 4Å: Chain B: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.7, ZN.8, ZN.9, ZN.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.74, B:G.122, B:S.123 Salt bridges: B:R.276 PO4.17: 7 residues within 4Å: Chain C: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:G.28, C:M.30 Salt bridges: C:K.112 PO4.18: 13 residues within 4Å: Chain C: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.13, ZN.14, ZN.15, ZN.16 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.97, C:D.121, C:G.122, C:S.123, C:E.280 Salt bridges: C:R.276 PO4.23: 7 residues within 4Å: Chain D: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:G.28, D:M.30 Salt bridges: D:K.112 PO4.24: 13 residues within 4Å: Chain D: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.19, ZN.20, ZN.21, ZN.22 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.74, D:G.122, D:S.123 Salt bridges: D:R.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nelson, S.W. et al., Tryptophan fluorescence reveals the conformational state of a dynamic loop in recombinant porcine fructose-1,6-bisphosphatase. Biochemistry (2000)

Release Date

2000-10-18

Peptides

FRUCTOSE-1,6-BISPHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

FRUCTOSE-1,6-BISPHOSPHATASE

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