SMTL ID : 1fj9.1

FRUCTOSE-1,6-BISPHOSPHATASE (MUTANT Y57W) PRODUCTS/ZN/AMP COMPLEX (T-STATE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 15 residues within 4Å: Chain A: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Chain B: R.243 Ligands: ZN.2, PO4.4 15 PLIP interactions: 12 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.122, A:N.212, A:Y.215, A:M.248, A:K.274 Water bridges: A:S.124, A:S.124, A:S.124, A:S.124, A:Y.215, A:K.274, B:R.243, B:R.243 Salt bridges: A:K.274, B:R.243 F6P.6: 16 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: ZN.7, PO4.9 19 PLIP interactions: 3 interactions with chain A, 16 interactions with chain B Water bridges: A:R.243, A:R.243, B:S.124, B:S.124, B:S.124, B:S.124, B:Y.215, B:Y.215 Salt bridges: A:R.243, B:K.274 Hydrogen bonds: B:D.121, B:G.122, B:N.212, B:Y.244, B:M.248, B:Y.264, B:K.274, B:R.276, B:R.276 F6P.11: 15 residues within 4Å: Chain C: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Chain D: R.243 Ligands: ZN.12, PO4.14 15 PLIP interactions: 12 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:G.122, C:N.212, C:Y.215, C:M.248, C:K.274 Water bridges: C:S.124, C:S.124, C:S.124, C:S.124, C:Y.215, C:K.274, D:R.243, D:R.243 Salt bridges: C:K.274, D:R.243 F6P.16: 16 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: ZN.17, PO4.19 19 PLIP interactions: 3 interactions with chain C, 16 interactions with chain D Water bridges: C:R.243, C:R.243, D:S.124, D:S.124, D:S.124, D:S.124, D:Y.215, D:Y.215 Salt bridges: C:R.243, D:K.274 Hydrogen bonds: D:D.121, D:G.122, D:N.212, D:Y.244, D:M.248, D:Y.264, D:K.274, D:R.276, D:R.276

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: E.97, D.118, D.121, E.280 Ligands: F6P.1, ZN.3, PO4.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.118, A:D.121, A:E.280 ZN.3: 6 residues within 4Å: Chain A: E.97, D.118, L.120, D.121 Ligands: ZN.2, PO4.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.97, A:D.118, A:L.120 ZN.7: 7 residues within 4Å: Chain B: E.97, D.118, D.121, E.280 Ligands: F6P.6, ZN.8, PO4.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.118, B:D.121, B:E.280 ZN.8: 6 residues within 4Å: Chain B: E.97, D.118, L.120, D.121 Ligands: ZN.7, PO4.9 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.97, B:D.118, B:L.120, H2O.8 ZN.12: 7 residues within 4Å: Chain C: E.97, D.118, D.121, E.280 Ligands: F6P.11, ZN.13, PO4.14 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.118, C:D.121, C:E.280 ZN.13: 6 residues within 4Å: Chain C: E.97, D.118, L.120, D.121 Ligands: ZN.12, PO4.14 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.97, C:D.118, C:L.120 ZN.17: 7 residues within 4Å: Chain D: E.97, D.118, D.121, E.280 Ligands: F6P.16, ZN.18, PO4.19 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.118, D:D.121, D:E.280 ZN.18: 6 residues within 4Å: Chain D: E.97, D.118, L.120, D.121 Ligands: ZN.17, PO4.19 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.97, D:D.118, D:L.120, H2O.16

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 10 residues within 4Å: Chain A: E.97, D.118, L.120, D.121, G.122, S.123, E.280 Ligands: F6P.1, ZN.2, ZN.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.97, A:G.122, A:S.123, A:S.123 Water bridges: A:K.274, A:K.274 PO4.9: 11 residues within 4Å: Chain B: E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.6, ZN.7, ZN.8 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.97, B:E.97, B:G.122, B:S.123 Water bridges: B:K.274 Salt bridges: B:R.276 PO4.14: 10 residues within 4Å: Chain C: E.97, D.118, L.120, D.121, G.122, S.123, E.280 Ligands: F6P.11, ZN.12, ZN.13 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.97, C:G.122, C:S.123, C:S.123 Water bridges: C:K.274, C:K.274 PO4.19: 11 residues within 4Å: Chain D: E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.16, ZN.17, ZN.18 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:E.97, D:E.97, D:G.122, D:S.123 Water bridges: D:K.274 Salt bridges: D:R.276

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.5: 15 residues within 4Å: Chain A: V.17, E.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:T.31, A:T.31, A:Y.113, A:Y.113, A:R.140 Water bridges: A:T.31, A:T.31 Salt bridges: A:K.112 AMP.10: 13 residues within 4Å: Chain B: V.17, E.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, M.177 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:T.27, B:G.28, B:E.29, B:M.30, B:T.31, B:Y.113, B:Y.113 Water bridges: B:T.31, B:T.31 Salt bridges: B:K.112 AMP.15: 15 residues within 4Å: Chain C: V.17, E.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:T.27, C:G.28, C:E.29, C:M.30, C:T.31, C:T.31, C:Y.113, C:Y.113, C:R.140 Water bridges: C:T.31, C:T.31 Salt bridges: C:K.112 AMP.20: 13 residues within 4Å: Chain D: V.17, E.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, M.177 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:T.27, D:G.28, D:E.29, D:M.30, D:T.31, D:Y.113, D:Y.113 Water bridges: D:T.31, D:T.31 Salt bridges: D:K.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nelson, S.W. et al., Tryptophan fluorescence reveals the conformational state of a dynamic loop in recombinant porcine fructose-1,6-bisphosphatase. Biochemistry (2000)

Release Date

2000-10-18

Peptides

FRUCTOSE-1,6-BISPHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

FRUCTOSE-1,6-BISPHOSPHATASE

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