SMTL ID : 1foa.1

CRYSTAL STRUCTURE OF N-ACETYLGLUCOSAMINYLTRANSFERASE I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: R.18, D.114 Ligands: UD1.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.114, H2O.38, H2O.87, H2O.116

1 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)

UD1.2: 22 residues within 4Å: Chain A: I.14, A.15, C.16, R.18, D.45, C.46, Y.85, K.87, I.88, H.91, Y.92, E.112, D.113, D.114, L.170, W.191, D.192, G.221, V.222, S.223, L.232 Ligands: MN.1 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:L.170, A:V.222, A:L.232 Hydrogen bonds: A:A.15, A:D.45, A:D.45, A:H.91, A:Y.92, A:Y.92, A:E.112, A:E.112, A:D.113, A:D.113, A:D.113, A:V.222, A:S.223 Water bridges: A:R.18, A:R.18, A:R.18, A:F.190, A:D.192, A:D.192, A:R.196 Salt bridges: A:R.18

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: R.32, A.35, P.39, I.40, S.60, A.61, V.62, T.63 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.32, A:R.32, A:I.40, A:T.63, A:T.63 GOL.4: 8 residues within 4Å: Chain A: Y.291, G.313, G.321, W.340, G.342, Y.343, D.344, W.347 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.344, A:D.344 Water bridges: A:W.340, A:G.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unligil, U.M. et al., X-ray crystal structure of rabbit N-acetylglucosaminyltransferase I: catalytic mechanism and a new protein superfamily. EMBO J. (2000)

Release Date

2001-05-16

Peptides

ALPHA-1,3-MANNOSYL-GLYCOPROTEIN BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ALPHA-1,3-MANNOSYL-GLYCOPROTEIN BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE

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