SMTL ID : 1fq3.1

CRYSTAL STRUCTURE OF HUMAN GRANZYME B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 9 residues within 4Å: Chain A: M.19, S.49, N.51, F.68 Chain B: W.21, L.26, S.49 Ligands: NAG-NAG-BMA.2, NAG-NAG-BMA.2 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 8 residues within 4Å: Chain A: E.95, R.96 Chain B: M.19, S.49, N.51, F.68 Ligands: NAG-NAG-BMA.1, NAG-NAG-BMA.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.95, A:R.96, A:R.96

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: H.44, K.180, G.181, S.183 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.181, A:S.183, A:S.183, A:S.183 Salt bridges: A:K.27 SO4.4: 5 residues within 4Å: Chain B: K.27, H.44, K.180, G.181, S.183 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.44, B:G.181, B:S.183, B:S.183, B:R.208 Salt bridges: B:K.27, B:K.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Estebanez-Perpina, E. et al., Crystal structure of the caspase activator human granzyme B, a proteinase highly specific for an Asp-P1 residue. Biol.Chem. (2000)

Release Date

2001-01-31

Peptides

GRANZYME B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GRANZYME B