SMTL ID : 1fr9.1

STRUCTURE OF E. COLI MOBA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-octamer

Ligands

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 10 residues within 4Å: Chain A: M.44, S.48, H.49, V.50, L.66 Chain G: H.49, K.67 Ligands: ZN.2, ACT.13, ZN.14 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain G Hydrophobic interactions: A:L.66 Hydrogen bonds: A:V.50 Salt bridges: A:H.49, G:H.49 Water bridges: G:K.67, G:K.67, G:K.67, G:K.67 ACT.3: 10 residues within 4Å: Chain B: M.44, S.48, H.49, V.50, L.66 Chain H: H.49, K.67 Ligands: ZN.4, ACT.15, ZN.16 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain H Hydrophobic interactions: B:L.66 Hydrogen bonds: B:V.50 Salt bridges: B:H.49, H:H.49 Water bridges: H:K.67, H:K.67, H:K.67, H:K.67 ACT.5: 10 residues within 4Å: Chain C: M.44, S.48, H.49, V.50, L.66 Chain E: H.49, K.67 Ligands: ZN.6, ACT.9, ZN.10 8 PLIP interactions: 5 interactions with chain E, 3 interactions with chain C Water bridges: E:K.67, E:K.67, E:K.67, E:K.67 Salt bridges: E:H.49, C:H.49 Hydrophobic interactions: C:L.66 Hydrogen bonds: C:V.50 ACT.7: 10 residues within 4Å: Chain D: M.44, S.48, H.49, V.50, L.66 Chain F: H.49, K.67 Ligands: ZN.8, ACT.11, ZN.12 8 PLIP interactions: 3 interactions with chain D, 5 interactions with chain F Hydrophobic interactions: D:L.66 Hydrogen bonds: D:V.50 Salt bridges: D:H.49, F:H.49 Water bridges: F:K.67, F:K.67, F:K.67, F:K.67 ACT.9: 10 residues within 4Å: Chain C: H.49, K.67 Chain E: M.44, S.48, H.49, V.50, L.66 Ligands: ACT.5, ZN.6, ZN.10 8 PLIP interactions: 3 interactions with chain E, 5 interactions with chain C Hydrophobic interactions: E:L.66 Hydrogen bonds: E:V.50 Salt bridges: E:H.49, C:H.49 Water bridges: C:K.67, C:K.67, C:K.67, C:K.67 ACT.11: 10 residues within 4Å: Chain D: H.49, K.67 Chain F: M.44, S.48, H.49, V.50, L.66 Ligands: ACT.7, ZN.8, ZN.12 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain F Water bridges: D:K.67, D:K.67, D:K.67, D:K.67 Salt bridges: D:H.49, F:H.49 Hydrophobic interactions: F:L.66 Hydrogen bonds: F:V.50 ACT.13: 10 residues within 4Å: Chain A: H.49, K.67 Chain G: M.44, S.48, H.49, V.50, L.66 Ligands: ACT.1, ZN.2, ZN.14 8 PLIP interactions: 3 interactions with chain G, 5 interactions with chain A Hydrophobic interactions: G:L.66 Hydrogen bonds: G:V.50 Salt bridges: G:H.49, A:H.49 Water bridges: A:K.67, A:K.67, A:K.67, A:K.67 ACT.15: 10 residues within 4Å: Chain B: H.49, K.67 Chain H: M.44, S.48, H.49, V.50, L.66 Ligands: ACT.3, ZN.4, ZN.16 8 PLIP interactions: 3 interactions with chain H, 5 interactions with chain B Hydrophobic interactions: H:L.66 Hydrogen bonds: H:V.50 Salt bridges: H:H.49, B:H.49 Water bridges: B:K.67, B:K.67, B:K.67, B:K.67

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.49 Chain G: H.49 Ligands: ACT.1, ACT.13, ZN.14 3 PLIP interactions: 1 interactions with chain G, 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: G:H.49, A:H.49, ACT.13 ZN.4: 5 residues within 4Å: Chain B: H.49 Chain H: H.49 Ligands: ACT.3, ACT.15, ZN.16 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: H:H.49, B:H.49, ACT.15 ZN.6: 5 residues within 4Å: Chain C: H.49 Chain E: H.49 Ligands: ACT.5, ACT.9, ZN.10 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E, 1 Ligand-Ligand interactions Metal complexes: C:H.49, E:H.49, ACT.9 ZN.8: 5 residues within 4Å: Chain D: H.49 Chain F: H.49 Ligands: ACT.7, ACT.11, ZN.12 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 1 Ligand-Ligand interactions Metal complexes: F:H.49, D:H.49, ACT.11 ZN.10: 5 residues within 4Å: Chain C: H.49 Chain E: H.49 Ligands: ACT.5, ZN.6, ACT.9 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E, 1 Ligand-Ligand interactions Metal complexes: C:H.49, E:H.49, ACT.5 ZN.12: 5 residues within 4Å: Chain D: H.49 Chain F: H.49 Ligands: ACT.7, ZN.8, ACT.11 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 1 Ligand-Ligand interactions Metal complexes: F:H.49, D:H.49, ACT.7 ZN.14: 5 residues within 4Å: Chain A: H.49 Chain G: H.49 Ligands: ACT.1, ZN.2, ACT.13 3 PLIP interactions: 1 interactions with chain G, 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: G:H.49, A:H.49, ACT.1 ZN.16: 5 residues within 4Å: Chain B: H.49 Chain H: H.49 Ligands: ACT.3, ZN.4, ACT.15 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain B Metal complexes: H:H.49, B:H.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lake, M.W. et al., The crystal structure of the Escherichia coli MobA protein provides insight into molybdopterin guanine dinucleotide biosynthesis. J.Biol.Chem. (2000)

Release Date

2001-01-10

Peptides

MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN

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