SMTL ID : 1frp.1

CRYSTAL STRUCTURE OF FRUCTOSE-1,6-BISPHOSPHATASE COMPLEXED WITH FRUCTOSE-2,6-BISPHOSPHATE, AMP AND ZN2+ AT 2.0 ANGSTROMS RESOLUTION. ASPECTS OF SYNERGISM BETWEEN INHIBITORS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x FDP: 2,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FDP.1: 18 residues within 4Å: Chain A: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275, R.276, E.280 Chain B: R.243 Ligands: ZN.2 23 PLIP interactions: 19 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.121, A:G.122, A:S.123, A:S.123, A:S.124, A:S.124, A:N.212, A:Y.215, A:Y.244, A:G.246, A:M.248, A:Y.264, A:Y.264, A:K.274, A:R.276, A:E.280 Water bridges: A:R.276, B:R.243, B:R.243, B:R.243 Salt bridges: A:K.274, A:K.274, B:R.243 FDP.4: 18 residues within 4Å: Chain A: R.243 Chain B: E.97, D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: ZN.5 22 PLIP interactions: 17 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:E.97, B:D.121, B:S.123, B:S.124, B:N.212, B:Y.215, B:Y.244, B:G.246, B:M.248, B:Y.264, B:K.274, B:R.276 Water bridges: B:Y.244, B:G.246, B:R.276, A:R.243, A:R.243, A:R.243, A:R.243 Salt bridges: B:K.274, B:K.274, A:R.243 FDP.7: 18 residues within 4Å: Chain C: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275, R.276, E.280 Chain D: R.243 Ligands: ZN.8 23 PLIP interactions: 19 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:S.123, C:S.123, C:S.124, C:S.124, C:N.212, C:Y.215, C:Y.244, C:G.246, C:M.248, C:Y.264, C:Y.264, C:K.274, C:R.276, C:E.280 Water bridges: C:R.276, D:R.243, D:R.243, D:R.243 Salt bridges: C:K.274, C:K.274, D:R.243 FDP.10: 18 residues within 4Å: Chain C: R.243 Chain D: E.97, D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: ZN.11 22 PLIP interactions: 5 interactions with chain C, 17 interactions with chain D Water bridges: C:R.243, C:R.243, C:R.243, C:R.243, D:Y.244, D:G.246, D:R.276 Salt bridges: C:R.243, D:K.274, D:K.274 Hydrogen bonds: D:E.97, D:D.121, D:S.123, D:S.124, D:N.212, D:Y.215, D:Y.244, D:G.246, D:M.248, D:Y.264, D:K.274, D:R.276

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: D.118, D.121, G.122, R.276, E.280 Ligands: FDP.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.118, A:D.121, A:E.280, H2O.1 ZN.5: 6 residues within 4Å: Chain B: D.118, D.121, G.122, R.276, E.280 Ligands: FDP.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.118, B:D.121, B:E.280, H2O.5 ZN.8: 6 residues within 4Å: Chain C: D.118, D.121, G.122, R.276, E.280 Ligands: FDP.7 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.118, C:D.121, C:E.280, H2O.10 ZN.11: 6 residues within 4Å: Chain D: D.118, D.121, G.122, R.276, E.280 Ligands: FDP.10 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.118, D:D.121, D:E.280, H2O.15

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 15 residues within 4Å: Chain A: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:T.31, A:T.31, A:Y.113, A:Y.113, A:R.140, A:R.140 Water bridges: A:A.24 Salt bridges: A:K.112 AMP.6: 15 residues within 4Å: Chain B: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:T.27, B:G.28, B:E.29, B:M.30, B:T.31, B:Y.113, B:Y.113, B:R.140 Water bridges: B:T.31, B:K.112, B:N.179 Salt bridges: B:K.112 AMP.9: 15 residues within 4Å: Chain C: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:T.27, C:G.28, C:E.29, C:M.30, C:T.31, C:T.31, C:Y.113, C:Y.113, C:R.140, C:R.140 Water bridges: C:A.24 Salt bridges: C:K.112 AMP.12: 15 residues within 4Å: Chain D: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:T.27, D:G.28, D:E.29, D:M.30, D:T.31, D:Y.113, D:Y.113, D:R.140 Water bridges: D:T.31, D:K.112, D:N.179 Salt bridges: D:K.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, Y. et al., Crystal structure of fructose-1,6-bisphosphatase complexed with fructose 2,6-bisphosphate, AMP, and Zn2+ at 2.0-A resolution: aspects of synergism between inhibitors. Proc.Natl.Acad.Sci.USA (1994)

Release Date

1994-11-30

Peptides

FRUCTOSE 1,6-BISPHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

FRUCTOSE 1,6-BISPHOSPHATASE