SMTL ID : 1fui.3 (2 other biounits)

L-FUCOSE ISOMERASE FROM ESCHERICHIA COLI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

5 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: E.337, D.361, S.393, H.528 Ligands: FOC.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.337, A:D.361, A:D.361, A:H.528, H2O.3 MN.4: 5 residues within 4Å: Chain B: E.337, D.361, S.393, H.528 Ligands: FOC.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.337, B:D.361, B:D.361, B:H.528, H2O.9 MN.6: 5 residues within 4Å: Chain C: E.337, D.361, S.393, H.528 Ligands: FOC.7 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.337, C:D.361, C:D.361, C:H.528, H2O.14 MN.8: 5 residues within 4Å: Chain D: E.337, D.361, S.393, H.528 Ligands: FOC.10 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.337, D:D.361, D:D.361, D:H.528, H2O.20 MN.11: 5 residues within 4Å: Chain E: E.337, D.361, S.393, H.528 Ligands: FOC.12 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.337, E:D.361, E:D.361, E:H.528, H2O.26

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.580 Chain B: R.580 Chain C: R.580 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C Salt bridges: B:R.580, A:R.580, C:R.580 SO4.9: 3 residues within 4Å: Chain D: R.580 Chain E: R.580 Chain F: R.580 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E, 1 interactions with chain F Salt bridges: D:R.580, E:R.580, F:R.580

6 x FOC: FUCITOL(Non-covalent)

FOC.3: 12 residues within 4Å: Chain A: M.185, Q.302, E.337, D.361, S.393, Y.440, W.499, N.527, H.528 Chain C: R.18, W.90 Ligands: MN.1 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:Y.440, A:W.499 Hydrogen bonds: A:Q.302, A:E.337, A:D.361, A:S.393, A:N.527, C:R.18, C:W.90 Water bridges: A:S.393 FOC.5: 12 residues within 4Å: Chain A: R.18, W.90 Chain B: M.185, Q.302, E.337, D.361, S.393, Y.440, W.499, N.527, H.528 Ligands: MN.4 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.440, B:W.499 Hydrogen bonds: B:Q.302, B:E.337, B:S.393, B:N.527, A:R.18, A:W.90 Water bridges: B:S.393 FOC.7: 12 residues within 4Å: Chain B: R.18, W.90 Chain C: M.185, Q.302, E.337, D.361, S.393, Y.440, W.499, N.527, H.528 Ligands: MN.6 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:Y.440, C:W.499 Hydrogen bonds: C:Q.302, C:E.337, C:E.337, C:S.393, C:N.527, B:R.18, B:W.90 Water bridges: C:S.393 FOC.10: 12 residues within 4Å: Chain D: M.185, Q.302, E.337, D.361, S.393, Y.440, W.499, N.527, H.528 Chain F: R.18, W.90 Ligands: MN.8 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:Y.440, D:W.499 Hydrogen bonds: D:Q.302, D:E.337, D:S.393, D:N.527, F:R.18, F:W.90 Water bridges: D:S.393 FOC.12: 12 residues within 4Å: Chain D: R.18, W.90 Chain E: M.185, Q.302, E.337, D.361, S.393, Y.440, W.499, N.527, H.528 Ligands: MN.11 9 PLIP interactions: 7 interactions with chain E, 2 interactions with chain D Hydrophobic interactions: E:Y.440, E:W.499 Hydrogen bonds: E:Q.302, E:E.337, E:S.393, E:N.527, D:R.18, D:W.90 Water bridges: E:S.393 FOC.13: 11 residues within 4Å: Chain E: R.18, W.90 Chain F: M.185, Q.302, E.337, D.361, S.393, Y.440, W.499, N.527, H.528 11 PLIP interactions: 2 interactions with chain E, 9 interactions with chain F Hydrogen bonds: E:R.18, E:W.90, F:Q.302, F:E.337, F:E.337, F:D.361, F:S.393, F:N.527 Hydrophobic interactions: F:Y.440, F:W.499 Water bridges: F:S.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seemann, J.E. et al., Structure and mechanism of L-fucose isomerase from Escherichia coli. J.Mol.Biol. (1997)

Release Date

1997-10-15

Peptides

L-FUCOSE ISOMERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

L-FUCOSE ISOMERASE

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