SMTL ID : 1fvi.1

CRYSTAL STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-ADENYLATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.41, R.175, K.185 Ligands: AMP.2 5 PLIP interactions: 5 interactions with chain A Water bridges: A:A.8, A:R.41 Salt bridges: A:R.41, A:R.175, A:K.185

1 x AMP: ADENOSINE MONOPHOSPHATE(Covalent)

AMP.2: 12 residues within 4Å: Chain A: T.24, P.25, K.26, I.27, R.31, R.41, E.66, F.97, L.136, M.163, K.185 Ligands: SO4.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.24, A:P.25, A:I.27, A:R.31, A:R.41 Water bridges: A:K.26, A:R.165, A:K.187 Salt bridges: A:K.26, A:K.185, A:K.187 pi-Stacking: A:F.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Odell, M. et al., Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining. Mol.Cell (2000)

Release Date

2000-11-22

Peptides

CHLORELLA VIRUS DNA LIGASE-ADENYLATE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CHLORELLA VIRUS DNA LIGASE-ADENYLATE