SMTL ID : 1fx8.1

CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITH SUBSTRATE GLYCEROL

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

12 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 10 residues within 4Å: Chain A: F.98, Y.105, Y.109, F.113, R.123, F.213, L.216, A.217, G.218 Ligands: BOG.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.98 Hydrogen bonds: A:Y.105 Water bridges: A:G.218, A:G.218 BOG.2: 5 residues within 4Å: Chain A: F.208, W.215, N.221, F.233, L.237 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.208, A:L.237, A:L.237 Hydrogen bonds: A:N.221 BOG.3: 6 residues within 4Å: Chain A: A.102, Y.105, G.106, Y.109, F.213 Ligands: BOG.1 No protein-ligand interaction detected (PLIP) BOG.7: 10 residues within 4Å: Chain B: F.98, Y.105, Y.109, F.113, R.123, F.213, L.216, A.217, G.218 Ligands: BOG.9 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.98 Hydrogen bonds: B:Y.105 Water bridges: B:G.218, B:G.218 BOG.8: 5 residues within 4Å: Chain B: F.208, W.215, N.221, F.233, L.237 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.208, B:L.237, B:L.237 Hydrogen bonds: B:N.221 BOG.9: 6 residues within 4Å: Chain B: A.102, Y.105, G.106, Y.109, F.213 Ligands: BOG.7 No protein-ligand interaction detected (PLIP) BOG.13: 10 residues within 4Å: Chain C: F.98, Y.105, Y.109, F.113, R.123, F.213, L.216, A.217, G.218 Ligands: BOG.15 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.98 Hydrogen bonds: C:Y.105 Water bridges: C:G.218, C:G.218 BOG.14: 5 residues within 4Å: Chain C: F.208, W.215, N.221, F.233, L.237 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.208, C:L.237, C:L.237 Hydrogen bonds: C:N.221 BOG.15: 6 residues within 4Å: Chain C: A.102, Y.105, G.106, Y.109, F.213 Ligands: BOG.13 No protein-ligand interaction detected (PLIP) BOG.19: 10 residues within 4Å: Chain D: F.98, Y.105, Y.109, F.113, R.123, F.213, L.216, A.217, G.218 Ligands: BOG.21 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:F.98 Hydrogen bonds: D:Y.105 Water bridges: D:G.218, D:G.218 BOG.20: 5 residues within 4Å: Chain D: F.208, W.215, N.221, F.233, L.237 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:F.208, D:L.237, D:L.237 Hydrogen bonds: D:N.221 BOG.21: 6 residues within 4Å: Chain D: A.102, Y.105, G.106, Y.109, F.213 Ligands: BOG.19 No protein-ligand interaction detected (PLIP)

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: W.48, T.137, G.199, F.200, A.201, R.206 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.199, A:R.206 Water bridges: A:W.48 GOL.5: 7 residues within 4Å: Chain A: Y.138, P.139, N.140, P.141, G.195, P.196, G.199 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.138, A:N.140, A:G.195 Water bridges: A:Y.138, A:P.196 GOL.6: 8 residues within 4Å: Chain A: V.52, H.66, L.67, N.68, V.71, L.159, I.187, N.203 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.67, A:N.68, A:N.203 GOL.10: 6 residues within 4Å: Chain B: W.48, T.137, G.199, F.200, A.201, R.206 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.199, B:R.206 Water bridges: B:W.48 GOL.11: 7 residues within 4Å: Chain B: Y.138, P.139, N.140, P.141, G.195, P.196, G.199 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.138, B:N.140, B:G.195 Water bridges: B:Y.138, B:P.196 GOL.12: 8 residues within 4Å: Chain B: V.52, H.66, L.67, N.68, V.71, L.159, I.187, N.203 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.67, B:N.68, B:N.203 GOL.16: 6 residues within 4Å: Chain C: W.48, T.137, G.199, F.200, A.201, R.206 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.199, C:R.206 Water bridges: C:W.48 GOL.17: 7 residues within 4Å: Chain C: Y.138, P.139, N.140, P.141, G.195, P.196, G.199 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Y.138, C:N.140, C:G.195 Water bridges: C:Y.138, C:P.196 GOL.18: 8 residues within 4Å: Chain C: V.52, H.66, L.67, N.68, V.71, L.159, I.187, N.203 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:L.67, C:N.68, C:N.203 GOL.22: 6 residues within 4Å: Chain D: W.48, T.137, G.199, F.200, A.201, R.206 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.199, D:R.206 Water bridges: D:W.48 GOL.23: 7 residues within 4Å: Chain D: Y.138, P.139, N.140, P.141, G.195, P.196, G.199 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Y.138, D:N.140, D:G.195 Water bridges: D:Y.138, D:P.196 GOL.24: 8 residues within 4Å: Chain D: V.52, H.66, L.67, N.68, V.71, L.159, I.187, N.203 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:L.67, D:N.68, D:N.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fu, D. et al., Structure of a glycerol-conducting channel and the basis for its selectivity. Science (2000)

Release Date

2000-11-01

Peptides

GLYCEROL UPTAKE FACILITATOR PROTEIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Membrane

We predict this structure to be a membrane protein.
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GLYCEROL UPTAKE FACILITATOR PROTEIN

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