- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
- 4 x A5P: ARABINOSE-5-PHOSPHATE(Non-covalent)
A5P.2: 12 residues within 4Å:- Chain A: K.46, N.48, R.49, S.50, R.154, H.185, Q.188, K.196, S.197, D.233
- Chain B: R.106
- Ligands: PEP.1
14 PLIP interactions:13 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.48, A:S.50, A:S.50, A:R.154, A:S.197, A:D.233
- Water bridges: A:K.46, A:K.46, A:R.49, A:S.51, A:Q.127, A:S.197
- Salt bridges: A:R.49, B:R.106
A5P.4: 11 residues within 4Å:- Chain A: R.106
- Chain B: K.46, N.48, R.49, S.50, H.185, Q.188, K.196, S.197, D.233
- Ligands: PEP.3
16 PLIP interactions:15 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:K.46, B:N.48, B:S.50, B:S.50, B:R.154, B:H.185, B:S.197, B:D.233
- Water bridges: B:R.49, B:S.51, B:A.102, B:Q.127, B:S.197, B:D.233
- Salt bridges: B:R.49, A:R.106
A5P.6: 12 residues within 4Å:- Chain C: K.46, N.48, R.49, S.50, R.154, H.185, Q.188, K.196, S.197, D.233
- Chain D: R.106
- Ligands: PEP.5
14 PLIP interactions:13 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:N.48, C:S.50, C:S.50, C:R.154, C:S.197, C:D.233
- Water bridges: C:K.46, C:K.46, C:R.49, C:S.51, C:Q.127, C:S.197
- Salt bridges: C:R.49, D:R.106
A5P.8: 11 residues within 4Å:- Chain C: R.106
- Chain D: K.46, N.48, R.49, S.50, H.185, Q.188, K.196, S.197, D.233
- Ligands: PEP.7
16 PLIP interactions:15 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:K.46, D:N.48, D:S.50, D:S.50, D:R.154, D:H.185, D:S.197, D:D.233
- Water bridges: D:R.49, D:R.49, D:S.51, D:A.102, D:Q.127, D:S.197
- Salt bridges: D:R.49, C:R.106
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Duewel, H.S. et al., Substrate and metal complexes of 3-deoxy-D-manno-octulosonate-8-phosphate synthase from Aquifex aeolicus at 1.9-A resolution. Implications for the condensation mechanism. J.Biol.Chem. (2001)
- Release Date
- 2001-04-21
- Peptides
- 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
- 4 x A5P: ARABINOSE-5-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Duewel, H.S. et al., Substrate and metal complexes of 3-deoxy-D-manno-octulosonate-8-phosphate synthase from Aquifex aeolicus at 1.9-A resolution. Implications for the condensation mechanism. J.Biol.Chem. (2001)
- Release Date
- 2001-04-21
- Peptides
- 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B