SMTL ID : 1fzd.2 (1 other biounit)

STRUCTURE OF RECOMBINANT ALPHAEC DOMAIN FROM HUMAN FIBRINOGEN-420

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: N.21, F.123, E.136, V.137, P.169, Y.170, N.174 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.123 Hydrogen bonds: A:Y.170, A:Y.170 NAG-NAG.2: 8 residues within 4Å: Chain B: N.21, F.123, E.136, V.137, G.139, P.169, Y.170, N.174 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.136, B:E.136

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.126, D.128, W.130, E.132 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.126, A:D.128, A:W.130, A:E.132, H2O.1 CA.4: 4 residues within 4Å: Chain B: D.126, D.128, W.130, E.132 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.126, B:D.128, B:W.130, B:E.132, H2O.4 CA.7: 4 residues within 4Å: Chain C: D.126, D.128, W.130, E.132 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.126, C:D.126, C:D.128, C:W.130, C:E.132 CA.10: 4 residues within 4Å: Chain D: D.126, D.128, W.130, E.132 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.126, D:D.126, D:D.128, D:W.130, D:E.132

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.5: 10 residues within 4Å: Chain C: N.21, F.123, E.136, V.137, G.139, I.155, P.169, Y.170, N.174 Ligands: NAG.6 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.155 Hydrogen bonds: C:N.21, C:E.136, C:E.136, C:Y.170, C:Y.170 NAG.6: 4 residues within 4Å: Chain C: F.123, E.136, Y.170 Ligands: NAG.5 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.123 Hydrogen bonds: C:E.136 NAG.8: 6 residues within 4Å: Chain D: N.21, F.123, E.136, V.137, G.139 Ligands: NAG.9 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.21, D:E.136, D:E.136 NAG.9: 4 residues within 4Å: Chain D: E.136, P.169, Y.170 Ligands: NAG.8 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.136, D:Y.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spraggon, G. et al., Crystal structure of a recombinant alphaEC domain from human fibrinogen-420. Proc.Natl.Acad.Sci.USA (1998)

Release Date

1998-08-19

Peptides

FIBRINOGEN-420: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

FIBRINOGEN-420

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