- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x NGA- NAG- GAL- SIA- FUC- GAL: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-[beta-D-galactopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-galactopyranose
- 2 x SR: STRONTIUM ION(Non-functional Binders)
SR.3: 6 residues within 4Å:- Chain A: E.80, N.82, E.88, N.105, D.106
- Ligands: NGA-NAG-GAL-SIA-FUC-GAL.2
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.80, A:E.88, A:D.106, A:D.106
SR.6: 6 residues within 4Å:- Chain B: E.80, N.82, E.88, N.105, D.106
- Ligands: NGA-NAG-GAL-SIA-FUC-GAL.1
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.80, B:E.88, B:D.106, B:D.106
- 7 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.4: 4 residues within 4Å:- Chain A: W.1, A.28, E.34, Y.118
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.1, A:W.1, A:A.28, A:Y.118, A:Y.118
- Hydrogen bonds: A:A.28, A:A.28
MRD.5: 5 residues within 4Å:- Chain A: N.139, Y.140, P.151, E.152
- Chain B: K.66
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.140, A:P.151
- Hydrogen bonds: A:N.139, A:E.152, B:K.66
- Water bridges: A:T.141, A:T.141
MRD.8: 6 residues within 4Å:- Chain B: W.1, Y.3, V.27, A.28, Q.30, Y.118
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:Y.3, B:A.28, B:Y.118, B:Y.118
- Hydrogen bonds: B:A.28, B:A.28
MRD.9: 4 residues within 4Å:- Chain B: Y.3, Y.37, V.41, L.42
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.42
- Hydrogen bonds: B:Y.3
- Water bridges: B:Y.37, B:Y.37
MRD.10: 5 residues within 4Å:- Chain B: W.1, Q.30, N.31, E.34, I.137
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.137
- Hydrogen bonds: B:Q.30, B:N.31, B:E.34, B:E.34
- Water bridges: B:I.137
MRD.11: 4 residues within 4Å:- Chain B: E.132, S.143, C.144, Y.145
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.132, B:E.132, B:S.143
MRD.12: 5 residues within 4Å:- Chain B: Y.10, I.14, K.17, Y.18, N.21
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:Y.10, B:I.14, B:K.17, B:N.21
- Hydrogen bonds: B:Y.10, B:N.21
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Somers, W.S. et al., Insights into the molecular basis of leukocyte tethering and rolling revealed by structures of P- and E-selectin bound to SLe(X) and PSGL-1. Cell(Cambridge,Mass.) (2000)
- Release Date
- 2001-10-13
- Peptides
- P-SELECTIN: AB
PSGL-1 PEPTIDE: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x NGA- NAG- GAL- SIA- FUC- GAL: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-[beta-D-galactopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-galactopyranose
- 2 x SR: STRONTIUM ION(Non-functional Binders)
- 7 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Somers, W.S. et al., Insights into the molecular basis of leukocyte tethering and rolling revealed by structures of P- and E-selectin bound to SLe(X) and PSGL-1. Cell(Cambridge,Mass.) (2000)
- Release Date
- 2001-10-13
- Peptides
- P-SELECTIN: AB
PSGL-1 PEPTIDE: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D