SMTL ID : 1g29.2 (2 other biounits)

MALK

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

6 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.1: 5 residues within 4Å: Chain A: G.29, K.183, Q.186, R.187, D.208 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.186, A:Q.186 Water bridges: A:K.183 NH4.29: 5 residues within 4Å: Chain B: G.29, K.183, Q.186, R.187, D.208 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.29, B:Q.186 Water bridges: B:K.183 NH4.57: 5 residues within 4Å: Chain C: G.29, K.183, Q.186, R.187, D.208 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.186, C:Q.186 NH4.58: 3 residues within 4Å: Chain A: A.180, K.184 Chain C: E.347 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.180, A:K.184 NH4.86: 5 residues within 4Å: Chain D: G.29, K.183, Q.186, R.187, D.208 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.186, D:D.208 NH4.87: 3 residues within 4Å: Chain B: A.180, K.184 Chain D: E.347 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Water bridges: D:E.347 Hydrogen bonds: B:K.184

20 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: V.227, Y.228, P.231, V.236, A.237, I.240, R.290 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: T.43, R.47 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: R.121, T.130, L.133 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain A: R.344 Chain D: V.304, E.307 Ligand excluded by PLIP CL.30: 7 residues within 4Å: Chain B: V.227, Y.228, P.231, V.236, A.237, I.240, R.290 Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain B: T.43, R.47 Ligand excluded by PLIP CL.37: 3 residues within 4Å: Chain B: R.121, T.130, L.133 Ligand excluded by PLIP CL.47: 3 residues within 4Å: Chain B: R.344 Chain C: V.304, E.307 Ligand excluded by PLIP CL.60: 7 residues within 4Å: Chain C: V.227, Y.228, P.231, V.236, A.237, I.240, R.290 Ligand excluded by PLIP CL.62: 3 residues within 4Å: Chain A: E.318 Chain C: R.179, T.205 Ligand excluded by PLIP CL.65: 4 residues within 4Å: Chain C: T.17, R.20, R.215 Ligands: CL.79 Ligand excluded by PLIP CL.79: 4 residues within 4Å: Chain C: R.20, R.215, V.217 Ligands: CL.65 Ligand excluded by PLIP CL.80: 3 residues within 4Å: Chain B: A.297, D.352 Chain C: R.303 Ligand excluded by PLIP CL.83: 2 residues within 4Å: Chain C: R.121, L.133 Ligand excluded by PLIP CL.89: 7 residues within 4Å: Chain D: V.227, Y.228, P.231, V.236, A.237, I.240, R.290 Ligand excluded by PLIP CL.91: 3 residues within 4Å: Chain B: E.318 Chain D: R.179, T.205 Ligand excluded by PLIP CL.94: 4 residues within 4Å: Chain D: T.17, R.20, R.215 Ligands: CL.108 Ligand excluded by PLIP CL.108: 4 residues within 4Å: Chain D: R.20, R.215, V.217 Ligands: CL.94 Ligand excluded by PLIP CL.109: 3 residues within 4Å: Chain A: A.297, D.352 Chain D: R.303 Ligand excluded by PLIP CL.112: 2 residues within 4Å: Chain D: R.121, L.133 Ligand excluded by PLIP

56 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: Y.228, E.292 Chain C: G.321, S.322, S.341 Ligands: MG.20 Ligand excluded by PLIP NA.5: 6 residues within 4Å: Chain A: I.316, V.317, E.347 Chain C: A.180, T.205 Ligands: NA.10 Ligand excluded by PLIP NA.7: 2 residues within 4Å: Chain A: K.11, E.53 Ligand excluded by PLIP NA.8: 2 residues within 4Å: Chain A: E.30, D.208 Ligand excluded by PLIP NA.10: 4 residues within 4Å: Chain A: E.347 Chain C: K.183, T.205 Ligands: NA.5 Ligand excluded by PLIP NA.11: 3 residues within 4Å: Chain A: D.296, M.298, V.351 Ligand excluded by PLIP NA.13: 5 residues within 4Å: Chain A: Y.228, D.229, R.290, K.359 Ligands: MG.6 Ligand excluded by PLIP NA.14: 3 residues within 4Å: Chain A: E.181, K.184, L.185 Ligand excluded by PLIP NA.15: 1 residues within 4Å: Chain A: D.225 Ligand excluded by PLIP NA.16: 3 residues within 4Å: Chain A: D.225 Chain C: R.324, S.341 Ligand excluded by PLIP NA.17: 3 residues within 4Å: Chain A: R.209, S.223, E.226 Ligand excluded by PLIP NA.18: 2 residues within 4Å: Chain A: D.225, D.229 Ligand excluded by PLIP NA.22: 1 residues within 4Å: Chain A: E.131 Ligand excluded by PLIP NA.23: 3 residues within 4Å: Chain A: E.347 Chain C: A.180, K.184 Ligand excluded by PLIP NA.24: 4 residues within 4Å: Chain A: D.82, R.156, K.157, P.158 Ligand excluded by PLIP NA.32: 6 residues within 4Å: Chain B: Y.228, E.292 Chain D: G.321, S.322, S.341 Ligands: MG.48 Ligand excluded by PLIP NA.33: 6 residues within 4Å: Chain B: I.316, V.317, E.347 Chain D: A.180, T.205 Ligands: NA.38 Ligand excluded by PLIP NA.35: 2 residues within 4Å: Chain B: K.11, E.53 Ligand excluded by PLIP NA.36: 2 residues within 4Å: Chain B: E.30, D.208 Ligand excluded by PLIP NA.38: 4 residues within 4Å: Chain B: E.347 Chain D: K.183, T.205 Ligands: NA.33 Ligand excluded by PLIP NA.39: 3 residues within 4Å: Chain B: D.296, M.298, V.351 Ligand excluded by PLIP NA.41: 5 residues within 4Å: Chain B: Y.228, D.229, R.290, K.359 Ligands: MG.34 Ligand excluded by PLIP NA.42: 3 residues within 4Å: Chain B: E.181, K.184, L.185 Ligand excluded by PLIP NA.43: 1 residues within 4Å: Chain B: D.225 Ligand excluded by PLIP NA.44: 3 residues within 4Å: Chain B: D.225 Chain D: R.324, S.341 Ligand excluded by PLIP NA.45: 3 residues within 4Å: Chain B: R.209, S.223, E.226 Ligand excluded by PLIP NA.46: 2 residues within 4Å: Chain B: D.225, D.229 Ligand excluded by PLIP NA.50: 1 residues within 4Å: Chain B: E.131 Ligand excluded by PLIP NA.51: 3 residues within 4Å: Chain B: E.347 Chain D: A.180, K.184 Ligand excluded by PLIP NA.52: 4 residues within 4Å: Chain B: D.82, R.156, K.157, P.158 Ligand excluded by PLIP NA.61: 7 residues within 4Å: Chain A: R.179, A.180, T.205 Chain C: I.316, V.317, E.347 Ligands: MG.69 Ligand excluded by PLIP NA.64: 3 residues within 4Å: Chain C: S.38, G.39, C.40 Ligand excluded by PLIP NA.66: 2 residues within 4Å: Chain C: D.225, D.229 Ligand excluded by PLIP NA.67: 6 residues within 4Å: Chain A: N.319, R.324 Chain C: M.204, P.224, D.225 Ligands: NA.78 Ligand excluded by PLIP NA.68: 1 residues within 4Å: Chain C: E.315 Ligand excluded by PLIP NA.72: 6 residues within 4Å: Chain C: Y.228, D.229, R.290, K.359 Ligands: MG.63, NA.82 Ligand excluded by PLIP NA.74: 3 residues within 4Å: Chain C: E.181, K.184, L.185 Ligand excluded by PLIP NA.75: 1 residues within 4Å: Chain C: D.80 Ligand excluded by PLIP NA.76: 3 residues within 4Å: Chain C: E.30, D.208, R.209 Ligand excluded by PLIP NA.78: 5 residues within 4Å: Chain A: R.324, S.341 Chain C: D.225 Ligands: NA.67, MG.71 Ligand excluded by PLIP NA.81: 2 residues within 4Å: Chain C: D.356, K.359 Ligand excluded by PLIP NA.82: 3 residues within 4Å: Chain C: D.229 Ligands: MG.63, NA.72 Ligand excluded by PLIP NA.84: 1 residues within 4Å: Chain C: E.54 Ligand excluded by PLIP NA.90: 7 residues within 4Å: Chain B: R.179, A.180, T.205 Chain D: I.316, V.317, E.347 Ligands: MG.98 Ligand excluded by PLIP NA.93: 3 residues within 4Å: Chain D: S.38, G.39, C.40 Ligand excluded by PLIP NA.95: 2 residues within 4Å: Chain D: D.225, D.229 Ligand excluded by PLIP NA.96: 6 residues within 4Å: Chain B: N.319, R.324 Chain D: M.204, P.224, D.225 Ligands: NA.107 Ligand excluded by PLIP NA.97: 1 residues within 4Å: Chain D: E.315 Ligand excluded by PLIP NA.101: 6 residues within 4Å: Chain D: Y.228, D.229, R.290, K.359 Ligands: MG.92, NA.111 Ligand excluded by PLIP NA.103: 3 residues within 4Å: Chain D: E.181, K.184, L.185 Ligand excluded by PLIP NA.104: 1 residues within 4Å: Chain D: D.80 Ligand excluded by PLIP NA.105: 3 residues within 4Å: Chain D: E.30, D.208, R.209 Ligand excluded by PLIP NA.107: 5 residues within 4Å: Chain B: R.324, S.341 Chain D: D.225 Ligands: NA.96, MG.100 Ligand excluded by PLIP NA.110: 2 residues within 4Å: Chain D: D.356, K.359 Ligand excluded by PLIP NA.111: 3 residues within 4Å: Chain D: D.229 Ligands: MG.92, NA.101 Ligand excluded by PLIP NA.113: 1 residues within 4Å: Chain D: E.54 Ligand excluded by PLIP

22 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 5 residues within 4Å: Chain A: R.290, E.292, D.293, K.359 Ligands: NA.13 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.292, A:D.293 MG.12: 4 residues within 4Å: Chain A: Q.59, D.69, E.71, K.72 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.69 MG.20: 3 residues within 4Å: Chain A: Y.228, D.229 Ligands: NA.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.229 MG.21: 2 residues within 4Å: Chain A: S.341, E.342 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.342, H2O.1, H2O.17, H2O.22 MG.34: 5 residues within 4Å: Chain B: R.290, E.292, D.293, K.359 Ligands: NA.41 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.292, B:D.293 MG.40: 4 residues within 4Å: Chain B: Q.59, D.69, E.71, K.72 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.69 MG.48: 3 residues within 4Å: Chain B: Y.228, D.229 Ligands: NA.32 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.229 MG.49: 2 residues within 4Å: Chain B: S.341, E.342 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.342, H2O.9, H2O.25, H2O.29 MG.59: 4 residues within 4Å: Chain C: D.293, Y.295, D.356, K.359 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.293, C:Y.295, C:D.356 MG.63: 6 residues within 4Å: Chain C: R.290, E.292, D.293, K.359 Ligands: NA.72, NA.82 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.292, C:D.293 MG.69: 4 residues within 4Å: Chain A: K.183, T.205 Chain C: E.347 Ligands: NA.61 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.347, H2O.1, H2O.17 MG.70: 3 residues within 4Å: Chain C: K.11, F.13, E.53 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.53 MG.71: 3 residues within 4Å: Chain A: R.324 Chain C: D.225 Ligands: NA.78 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.225, H2O.6 MG.73: 3 residues within 4Å: Chain C: T.43, D.164, V.196 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:T.43, C:D.164, C:D.164 MG.77: 3 residues within 4Å: Chain C: G.222, S.223, E.226 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.226 MG.88: 4 residues within 4Å: Chain D: D.293, Y.295, D.356, K.359 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.293, D:Y.295, D:D.356 MG.92: 6 residues within 4Å: Chain D: R.290, E.292, D.293, K.359 Ligands: NA.101, NA.111 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:E.292, D:D.293 MG.98: 4 residues within 4Å: Chain B: K.183, T.205 Chain D: E.347 Ligands: NA.90 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.347, H2O.9, H2O.24 MG.99: 3 residues within 4Å: Chain D: K.11, F.13, E.53 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.53 MG.100: 3 residues within 4Å: Chain B: R.324 Chain D: D.225 Ligands: NA.107 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.225, H2O.14 MG.102: 3 residues within 4Å: Chain D: T.43, D.164, V.196 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:T.43, D:D.164, D:D.164 MG.106: 3 residues within 4Å: Chain D: G.222, S.223, E.226 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.226

4 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.25: 8 residues within 4Å: Chain A: P.37, S.38, G.39, C.40, G.41, K.42, T.43, T.44 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.39, A:C.40, A:G.41, A:K.42, A:T.43, A:T.43, A:T.44 Water bridges: A:T.43 Salt bridges: A:K.42 POP.53: 8 residues within 4Å: Chain B: P.37, S.38, G.39, C.40, G.41, K.42, T.43, T.44 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.39, B:C.40, B:G.41, B:K.42, B:T.43, B:T.43, B:T.44 Water bridges: B:T.43 Salt bridges: B:K.42 POP.85: 8 residues within 4Å: Chain C: P.37, S.38, G.39, C.40, G.41, K.42, T.43, T.44 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:G.39, C:C.40, C:G.41, C:T.43, C:T.44, C:T.44 Water bridges: C:K.42, C:T.44, C:R.47 Salt bridges: C:K.42 POP.114: 8 residues within 4Å: Chain D: P.37, S.38, G.39, C.40, G.41, K.42, T.43, T.44 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:G.39, D:C.40, D:G.41, D:T.43, D:T.44, D:T.44 Water bridges: D:K.42, D:T.44, D:R.47 Salt bridges: D:K.42

6 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.26: 3 residues within 4Å: Chain A: W.10, S.56, R.57 No protein-ligand interaction detected (PLIP) DIO.27: 2 residues within 4Å: Chain A: G.14 Ligands: DIO.28 No protein-ligand interaction detected (PLIP) DIO.28: 4 residues within 4Å: Chain A: V.12, S.56, R.57 Ligands: DIO.27 No protein-ligand interaction detected (PLIP) DIO.54: 3 residues within 4Å: Chain B: W.10, S.56, R.57 No protein-ligand interaction detected (PLIP) DIO.55: 2 residues within 4Å: Chain B: G.14 Ligands: DIO.56 No protein-ligand interaction detected (PLIP) DIO.56: 4 residues within 4Å: Chain B: V.12, S.56, R.57 Ligands: DIO.55 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diederichs, K. et al., Crystal structure of MalK, the ATPase subunit of the trehalose/maltose ABC transporter of the archaeon Thermococcus litoralis. EMBO J. (2000)

Release Date

2000-12-06

Peptides

MALTOSE TRANSPORT PROTEIN MALK: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
1

C
2

D
2

MALTOSE TRANSPORT PROTEIN MALK

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