SMTL ID : 1g5g.1 (1 other biounit)

FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-trimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: L.35, L.50, N.54, T.58, S.247, Q.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.247 NAG-NAG.3: 6 residues within 4Å: Chain B: L.35, L.50, N.54, T.58, S.247, Q.248 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain B: D.157, N.160 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.160 NAG-NAG.5: 5 residues within 4Å: Chain C: L.35, N.54, T.58, S.247, Q.248 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 5 residues within 4Å: Chain A: Q.414, N.416 Chain B: T.59, T.62 Chain C: Y.208 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.59, B:T.62, B:T.62

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain C: K.415, N.416 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:K.415, C:N.416 Hydrogen bonds: C:N.416, C:N.416

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L. et al., The structure of the fusion glycoprotein of Newcastle disease virus suggests a novel paradigm for the molecular mechanism of membrane fusion. Structure (2001)

Release Date

2002-02-27

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fusion glycoprotein F0

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