SMTL ID : 1g5n.1

ANNEXIN V COMPLEX WITH HEPARIN OLIGOSACCHARIDES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x SGN- IDS- SGN- UAP: 4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose

SGN-IDS-SGN-UAP.1: 8 residues within 4Å: Chain A: R.22, K.26, G.27, L.28, R.60, K.67, S.68 Ligands: CA.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.27, A:R.60, A:R.60 Water bridges: A:R.22, A:M.25, A:E.69, A:G.27 Salt bridges: A:R.22, A:R.60 SGN-IDS-SGN-UAP.2: 9 residues within 4Å: Chain A: A.1, L.2, D.161, T.162, A.163, S.201, R.204, R.205, N.280 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.204, A:A.1, A:N.280, A:A.1, A:L.2 Salt bridges: A:R.204, A:R.205

9 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: M.25, G.27, G.29, E.69 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:M.25, A:G.27, A:G.29, A:E.69, H2O.5 CA.4: 5 residues within 4Å: Chain A: K.67, L.70, T.71, E.75 Ligands: SGN-IDS-SGN-UAP.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:K.67, A:L.70, A:E.75, H2O.4, H2O.6 CA.5: 2 residues within 4Å: Chain A: T.30, E.32 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.30, A:E.32, A:E.32, H2O.7, H2O.9 CA.6: 7 residues within 4Å: Chain A: L.97, K.98, G.99, A.100, G.101, T.102, D.141 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.97, A:G.99, A:G.101, A:D.141, H2O.11 CA.7: 2 residues within 4Å: Chain A: T.102, E.104 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.102, A:E.104, H2O.2, H2O.5, H2O.8 CA.8: 4 residues within 4Å: Chain A: G.180, K.183, G.185, E.225 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.180, A:K.183, A:G.185, A:E.225, H2O.9 CA.9: 3 residues within 4Å: Chain A: D.223, T.226, E.231 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.223, A:D.223, A:E.231, H2O.1, H2O.4 CA.10: 2 residues within 4Å: Chain A: T.186, E.188 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.186, A:E.188, H2O.1 CA.11: 4 residues within 4Å: Chain A: M.256, G.258, G.260, D.300 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.256, A:G.258, A:G.260, A:D.300, A:D.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Capila, I. et al., Annexin V--heparin oligosaccharide complex suggests heparan sulfate--mediated assembly on cell surfaces. Structure (2001)

Release Date

2001-06-06

Peptides

ANNEXIN V: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ANNEXIN V

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