SMTL ID : 1g7v.2 (1 other biounit)

CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEXES WITH THE MECHANISM-BASED INHIBITOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x PAI: {[(2,2-DIHYDROXY-ETHYL)-(2,3,4,5-TETRAHYDROXY-6-PHOSPHONOOXY-HEXYL)-AMINO]-METHYL}-PHOSPHONIC ACID(Non-covalent)

PAI.1: 15 residues within 4Å: Chain A: V.27, N.62, R.63, A.116, F.117, Q.141, R.168, H.202, Q.205, C.206, H.246, A.247, D.250, G.251, P.252 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.62, A:R.63, A:R.168, A:H.202, A:Q.205, A:G.251 Salt bridges: A:R.63 PAI.2: 15 residues within 4Å: Chain B: V.27, N.62, R.63, A.116, F.117, Q.141, R.168, H.202, Q.205, C.206, H.246, A.247, D.250, G.251, P.252 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.62, B:R.63, B:R.168, B:H.202, B:Q.205, B:G.251 Salt bridges: B:R.63 PAI.3: 15 residues within 4Å: Chain C: V.27, N.62, R.63, A.116, F.117, Q.141, R.168, H.202, Q.205, C.206, H.246, A.247, D.250, G.251, P.252 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.62, C:R.63, C:R.168, C:Q.205, C:G.251 Salt bridges: C:R.63 PAI.4: 15 residues within 4Å: Chain D: V.27, N.62, R.63, A.116, F.117, Q.141, R.168, H.202, Q.205, C.206, H.246, A.247, D.250, G.251, P.252 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:N.62, D:R.63, D:R.168, D:Q.205, D:G.251 Salt bridges: D:R.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asojo, O. et al., Crystal structures of KDOP synthase in its binary complexes with the substrate phosphoenolpyruvate and with a mechanism-based inhibitor. Biochemistry (2001)

Release Date

2001-05-16

Peptides

2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE

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