SMTL ID : 1g87.1 (1 other biounit)

THE CRYSTAL STRUCTURE OF ENDOGLUCANASE 9G FROM CLOSTRIDIUM CELLULOLYTICUM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.500, E.503, N.578, N.581, D.582 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.500, A:E.503, A:N.578, A:D.582, H2O.3 CA.2: 4 residues within 4Å: Chain A: S.209, D.212, D.213, D.259 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.212, A:D.212, A:D.259, H2O.11, H2O.11

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: H.371 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.371, H2O.9, H2O.11, H2O.11, H2O.11 MG.4: 2 residues within 4Å: Chain A: D.24, L.25 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.24, H2O.5, H2O.5, H2O.12, H2O.12 MG.5: 1 residues within 4Å: Chain A: D.500 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.500, H2O.5, H2O.8, H2O.13, H2O.13

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 6 residues within 4Å: Chain A: S.209, D.212, W.241, G.242, D.260, H.262 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.242, A:D.260 EDO.7: 3 residues within 4Å: Chain A: Y.78, E.79, K.271 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.271 Water bridges: A:Y.78, A:E.79, A:K.271 EDO.8: 3 residues within 4Å: Chain A: W.258, W.311, R.315 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.315, A:R.315, A:D.424

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 5 residues within 4Å: Chain A: H.371, T.386, T.389, E.412, I.413 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.371, A:T.386, A:I.413 GOL.10: 1 residues within 4Å: Chain A: W.534 No protein-ligand interaction detected (PLIP) GOL.11: 5 residues within 4Å: Chain A: D.195, A.196, Y.198, S.206, S.207 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.198, A:S.207 GOL.12: 5 residues within 4Å: Chain A: S.494, K.496, N.544, D.546, G.606 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.494, A:K.496, A:N.544, A:N.544, A:D.546

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mandelman, D. et al., X-Ray Crystal Structure of the Multidomain Endoglucanase Cel9G from Clostridiumcellulolyticum Complexed with Natural and Synthetic Cello-Oligosaccharides. J.BACTERIOL. (2003)

Release Date

2003-07-15

Peptides

ENDOCELLULASE 9G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDOCELLULASE 9G

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