- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 33 x CD: CADMIUM ION(Non-covalent)
- 18 x CA: CALCIUM ION(Non-covalent)
CA.6: 1 residues within 4Å:- Chain A: D.151
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.151, A:D.151
CA.8: 1 residues within 4Å:- Chain A: D.303
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.303
CA.9: 1 residues within 4Å:- Chain A: D.489
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.489, H2O.41
CA.22: 1 residues within 4Å:- Chain B: D.151
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:D.151, B:D.151
CA.24: 2 residues within 4Å:- Chain B: K.297, D.303
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.303
CA.25: 1 residues within 4Å:- Chain B: D.489
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.489, B:D.489, H2O.424
CA.56: 1 residues within 4Å:- Chain C: D.151
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.151, C:D.151
CA.58: 1 residues within 4Å:- Chain C: D.303
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:D.303
CA.59: 1 residues within 4Å:- Chain C: D.489
2 PLIP interactions:1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.489, H2O.804
CA.72: 1 residues within 4Å:- Chain D: D.151
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.151, D:D.151
CA.74: 2 residues within 4Å:- Chain D: K.297, D.303
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:D.303
CA.75: 1 residues within 4Å:- Chain D: D.489
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.489, D:D.489, H2O.1187
CA.106: 1 residues within 4Å:- Chain E: D.151
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:D.151, E:D.151
CA.108: 1 residues within 4Å:- Chain E: D.303
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:D.303
CA.109: 1 residues within 4Å:- Chain E: D.489
2 PLIP interactions:1 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.489, H2O.1567
CA.122: 1 residues within 4Å:- Chain F: D.151
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:D.151, F:D.151
CA.124: 2 residues within 4Å:- Chain F: K.297, D.303
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:D.303
CA.125: 1 residues within 4Å:- Chain F: D.489
3 PLIP interactions:2 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:D.489, F:D.489, H2O.1950
- 36 x NA: SODIUM ION(Non-functional Binders)
NA.7: 1 residues within 4Å:- Chain F: E.409
Ligand excluded by PLIPNA.11: 1 residues within 4Å:- Chain A: D.309
Ligand excluded by PLIPNA.12: 1 residues within 4Å:- Chain A: D.322
Ligand excluded by PLIPNA.14: 1 residues within 4Å:- Chain A: E.130
Ligand excluded by PLIPNA.15: 1 residues within 4Å:- Chain A: E.324
Ligand excluded by PLIPNA.16: 1 residues within 4Å:- Chain A: D.505
Ligand excluded by PLIPNA.23: 1 residues within 4Å:- Chain C: E.409
Ligand excluded by PLIPNA.27: 1 residues within 4Å:- Chain B: D.309
Ligand excluded by PLIPNA.28: 1 residues within 4Å:- Chain B: E.324
Ligand excluded by PLIPNA.29: 2 residues within 4Å:- Chain B: H.319, D.322
Ligand excluded by PLIPNA.30: 3 residues within 4Å:- Chain B: P.2, A.3, D.322
Ligand excluded by PLIPNA.31: 1 residues within 4Å:- Chain B: D.505
Ligand excluded by PLIPNA.57: 1 residues within 4Å:- Chain B: E.409
Ligand excluded by PLIPNA.61: 1 residues within 4Å:- Chain C: D.309
Ligand excluded by PLIPNA.62: 1 residues within 4Å:- Chain C: D.322
Ligand excluded by PLIPNA.64: 1 residues within 4Å:- Chain C: E.130
Ligand excluded by PLIPNA.65: 1 residues within 4Å:- Chain C: E.324
Ligand excluded by PLIPNA.66: 1 residues within 4Å:- Chain C: D.505
Ligand excluded by PLIPNA.73: 1 residues within 4Å:- Chain E: E.409
Ligand excluded by PLIPNA.77: 1 residues within 4Å:- Chain D: D.309
Ligand excluded by PLIPNA.78: 1 residues within 4Å:- Chain D: E.324
Ligand excluded by PLIPNA.79: 2 residues within 4Å:- Chain D: H.319, D.322
Ligand excluded by PLIPNA.80: 3 residues within 4Å:- Chain D: P.2, A.3, D.322
Ligand excluded by PLIPNA.81: 1 residues within 4Å:- Chain D: D.505
Ligand excluded by PLIPNA.107: 1 residues within 4Å:- Chain D: E.409
Ligand excluded by PLIPNA.111: 1 residues within 4Å:- Chain E: D.309
Ligand excluded by PLIPNA.112: 1 residues within 4Å:- Chain E: D.322
Ligand excluded by PLIPNA.114: 1 residues within 4Å:- Chain E: E.130
Ligand excluded by PLIPNA.115: 1 residues within 4Å:- Chain E: E.324
Ligand excluded by PLIPNA.116: 1 residues within 4Å:- Chain E: D.505
Ligand excluded by PLIPNA.123: 1 residues within 4Å:- Chain A: E.409
Ligand excluded by PLIPNA.127: 1 residues within 4Å:- Chain F: D.309
Ligand excluded by PLIPNA.128: 1 residues within 4Å:- Chain F: E.324
Ligand excluded by PLIPNA.129: 2 residues within 4Å:- Chain F: H.319, D.322
Ligand excluded by PLIPNA.130: 3 residues within 4Å:- Chain F: P.2, A.3, D.322
Ligand excluded by PLIPNA.131: 1 residues within 4Å:- Chain F: D.505
Ligand excluded by PLIP- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.10: 3 residues within 4Å:- Chain A: E.46, P.164, H.166
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.46, A:E.46, A:P.164, A:H.166, H2O.325
MG.26: 3 residues within 4Å:- Chain B: E.46, P.164, H.166
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.46, B:P.164, B:H.166, H2O.568, H2O.696
MG.60: 3 residues within 4Å:- Chain C: E.46, P.164, H.166
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.46, C:E.46, C:P.164, C:H.166, H2O.1088
MG.76: 3 residues within 4Å:- Chain D: E.46, P.164, H.166
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.46, D:P.164, D:H.166, H2O.1331, H2O.1459
MG.110: 3 residues within 4Å:- Chain E: E.46, P.164, H.166
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:E.46, E:E.46, E:P.164, E:H.166, H2O.1851
MG.126: 3 residues within 4Å:- Chain F: E.46, P.164, H.166
5 PLIP interactions:3 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:E.46, F:P.164, F:H.166, H2O.2094, H2O.2222
- 6 x ADX: ADENOSINE-5'-PHOSPHOSULFATE(Non-covalent)
ADX.32: 16 residues within 4Å:- Chain A: F.194, Q.195, T.196, R.197, N.198, H.204, L.207, M.263, V.288, G.289, R.290, H.292, A.293, R.329, M.330, V.331
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:Q.195, A:T.196, A:R.197, A:N.198, A:N.198, A:G.289, A:R.290, A:H.292, A:A.293, A:V.331, A:V.331
- Salt bridges: A:R.197, A:R.197, A:H.292
- pi-Cation interactions: A:R.290
ADX.33: 17 residues within 4Å:- Chain B: F.194, Q.195, T.196, R.197, N.198, H.204, L.207, M.263, I.287, V.288, G.289, R.290, H.292, A.293, R.329, M.330, V.331
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:Q.195, B:R.197, B:N.198, B:N.198, B:I.287, B:G.289, B:R.290, B:A.293, B:V.331, B:V.331
- Water bridges: B:R.197, B:R.197
- Salt bridges: B:R.197, B:R.197, B:H.292
ADX.82: 16 residues within 4Å:- Chain C: F.194, Q.195, T.196, R.197, N.198, H.204, L.207, M.263, V.288, G.289, R.290, H.292, A.293, R.329, M.330, V.331
15 PLIP interactions:15 interactions with chain C- Hydrogen bonds: C:Q.195, C:T.196, C:R.197, C:N.198, C:N.198, C:G.289, C:R.290, C:H.292, C:A.293, C:V.331, C:V.331
- Salt bridges: C:R.197, C:R.197, C:H.292
- pi-Cation interactions: C:R.290
ADX.83: 17 residues within 4Å:- Chain D: F.194, Q.195, T.196, R.197, N.198, H.204, L.207, M.263, I.287, V.288, G.289, R.290, H.292, A.293, R.329, M.330, V.331
15 PLIP interactions:15 interactions with chain D- Hydrogen bonds: D:Q.195, D:R.197, D:N.198, D:N.198, D:I.287, D:G.289, D:R.290, D:A.293, D:V.331, D:V.331
- Water bridges: D:R.197, D:R.197
- Salt bridges: D:R.197, D:R.197, D:H.292
ADX.132: 16 residues within 4Å:- Chain E: F.194, Q.195, T.196, R.197, N.198, H.204, L.207, M.263, V.288, G.289, R.290, H.292, A.293, R.329, M.330, V.331
15 PLIP interactions:15 interactions with chain E- Hydrogen bonds: E:Q.195, E:T.196, E:R.197, E:N.198, E:N.198, E:G.289, E:R.290, E:H.292, E:A.293, E:V.331, E:V.331
- Salt bridges: E:R.197, E:R.197, E:H.292
- pi-Cation interactions: E:R.290
ADX.133: 17 residues within 4Å:- Chain F: F.194, Q.195, T.196, R.197, N.198, H.204, L.207, M.263, I.287, V.288, G.289, R.290, H.292, A.293, R.329, M.330, V.331
15 PLIP interactions:15 interactions with chain F- Hydrogen bonds: F:Q.195, F:R.197, F:N.198, F:N.198, F:I.287, F:G.289, F:R.290, F:A.293, F:V.331, F:V.331
- Water bridges: F:R.197, F:R.197
- Salt bridges: F:R.197, F:R.197, F:H.292
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.34: 3 residues within 4Å:- Chain A: P.2, A.3, R.180
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.180
- Water bridges: A:G.282
TRS.35: 3 residues within 4Å:- Chain B: P.2, R.180, D.189
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:P.2, B:R.180, B:D.189
- Water bridges: B:R.180
TRS.84: 3 residues within 4Å:- Chain C: P.2, A.3, R.180
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.180
- Water bridges: C:G.282
TRS.85: 3 residues within 4Å:- Chain D: P.2, R.180, D.189
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:P.2, D:R.180, D:D.189
- Water bridges: D:R.180
TRS.134: 3 residues within 4Å:- Chain E: P.2, A.3, R.180
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:R.180
- Water bridges: E:G.282
TRS.135: 3 residues within 4Å:- Chain F: P.2, R.180, D.189
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:P.2, F:R.180, F:D.189
- Water bridges: F:R.180
- 45 x ACY: ACETIC ACID(Non-functional Binders)
ACY.36: 7 residues within 4Å:- Chain A: A.17, L.18, K.19, K.20, N.21, E.22
- Ligands: CD.3
Ligand excluded by PLIPACY.37: 7 residues within 4Å:- Chain A: Q.187, D.189
- Chain E: P.491, S.493, H.494
- Ligands: CD.5, ACY.41
Ligand excluded by PLIPACY.38: 5 residues within 4Å:- Chain A: E.486, E.490, H.494
- Chain C: R.190, N.216
Ligand excluded by PLIPACY.39: 7 residues within 4Å:- Chain A: K.174, Q.178, E.182
- Chain D: L.181, E.182, S.185
- Ligands: ACY.96
Ligand excluded by PLIPACY.40: 9 residues within 4Å:- Chain A: E.182, R.186
- Chain D: L.172, K.174, E.182, F.255
- Ligands: CD.4, CD.70, ACY.97
Ligand excluded by PLIPACY.41: 6 residues within 4Å:- Chain A: D.189, R.190
- Chain E: P.491, H.494
- Ligands: CD.5, ACY.37
Ligand excluded by PLIPACY.42: 6 residues within 4Å:- Chain A: D.168, H.235, H.236
- Chain F: S.417, L.420
- Ligands: CD.1
Ligand excluded by PLIPACY.43: 7 residues within 4Å:- Chain B: A.17, L.18, K.19, K.20, N.21, E.22
- Ligands: CD.19
Ligand excluded by PLIPACY.44: 7 residues within 4Å:- Chain B: Q.187, D.189
- Chain D: P.491, S.493, H.494
- Ligands: CD.21, ACY.48
Ligand excluded by PLIPACY.45: 3 residues within 4Å:- Chain B: E.490, H.494
- Chain F: N.216
Ligand excluded by PLIPACY.46: 7 residues within 4Å:- Chain B: K.174, Q.178, E.182
- Chain E: L.181, E.182, S.185
- Ligands: ACY.139
Ligand excluded by PLIPACY.47: 10 residues within 4Å:- Chain B: E.182, R.186
- Chain E: G.171, L.172, K.174, E.182, F.255
- Ligands: CD.20, CD.104, ACY.140
Ligand excluded by PLIPACY.48: 6 residues within 4Å:- Chain B: D.189, R.190
- Chain D: P.491, H.494
- Ligands: CD.21, ACY.44
Ligand excluded by PLIPACY.49: 6 residues within 4Å:- Chain B: D.168, H.235, H.236
- Chain C: S.417, L.420
- Ligands: CD.17
Ligand excluded by PLIPACY.50: 3 residues within 4Å:- Chain A: D.71, R.73
- Ligands: CD.13
Ligand excluded by PLIPACY.86: 7 residues within 4Å:- Chain C: A.17, L.18, K.19, K.20, N.21, E.22
- Ligands: CD.53
Ligand excluded by PLIPACY.87: 7 residues within 4Å:- Chain A: P.491, S.493, H.494
- Chain C: Q.187, D.189
- Ligands: CD.55, ACY.91
Ligand excluded by PLIPACY.88: 5 residues within 4Å:- Chain C: E.486, E.490, H.494
- Chain E: R.190, N.216
Ligand excluded by PLIPACY.89: 7 residues within 4Å:- Chain C: K.174, Q.178, E.182
- Chain F: L.181, E.182, S.185
- Ligands: ACY.146
Ligand excluded by PLIPACY.90: 9 residues within 4Å:- Chain C: E.182, R.186
- Chain F: L.172, K.174, E.182, F.255
- Ligands: CD.54, CD.120, ACY.147
Ligand excluded by PLIPACY.91: 6 residues within 4Å:- Chain A: P.491, H.494
- Chain C: D.189, R.190
- Ligands: CD.55, ACY.87
Ligand excluded by PLIPACY.92: 6 residues within 4Å:- Chain B: S.417, L.420
- Chain C: D.168, H.235, H.236
- Ligands: CD.51
Ligand excluded by PLIPACY.93: 7 residues within 4Å:- Chain D: A.17, L.18, K.19, K.20, N.21, E.22
- Ligands: CD.69
Ligand excluded by PLIPACY.94: 7 residues within 4Å:- Chain D: Q.187, D.189
- Chain F: P.491, S.493, H.494
- Ligands: CD.71, ACY.98
Ligand excluded by PLIPACY.95: 3 residues within 4Å:- Chain B: N.216
- Chain D: E.490, H.494
Ligand excluded by PLIPACY.96: 7 residues within 4Å:- Chain A: L.181, E.182, S.185
- Chain D: K.174, Q.178, E.182
- Ligands: ACY.39
Ligand excluded by PLIPACY.97: 10 residues within 4Å:- Chain A: G.171, L.172, K.174, E.182, F.255
- Chain D: E.182, R.186
- Ligands: CD.4, ACY.40, CD.70
Ligand excluded by PLIPACY.98: 6 residues within 4Å:- Chain D: D.189, R.190
- Chain F: P.491, H.494
- Ligands: CD.71, ACY.94
Ligand excluded by PLIPACY.99: 6 residues within 4Å:- Chain D: D.168, H.235, H.236
- Chain E: S.417, L.420
- Ligands: CD.67
Ligand excluded by PLIPACY.100: 3 residues within 4Å:- Chain C: D.71, R.73
- Ligands: CD.63
Ligand excluded by PLIPACY.136: 7 residues within 4Å:- Chain E: A.17, L.18, K.19, K.20, N.21, E.22
- Ligands: CD.103
Ligand excluded by PLIPACY.137: 7 residues within 4Å:- Chain C: P.491, S.493, H.494
- Chain E: Q.187, D.189
- Ligands: CD.105, ACY.141
Ligand excluded by PLIPACY.138: 5 residues within 4Å:- Chain A: R.190, N.216
- Chain E: E.486, E.490, H.494
Ligand excluded by PLIPACY.139: 7 residues within 4Å:- Chain B: L.181, E.182, S.185
- Chain E: K.174, Q.178, E.182
- Ligands: ACY.46
Ligand excluded by PLIPACY.140: 9 residues within 4Å:- Chain B: L.172, K.174, E.182, F.255
- Chain E: E.182, R.186
- Ligands: CD.20, ACY.47, CD.104
Ligand excluded by PLIPACY.141: 6 residues within 4Å:- Chain C: P.491, H.494
- Chain E: D.189, R.190
- Ligands: CD.105, ACY.137
Ligand excluded by PLIPACY.142: 6 residues within 4Å:- Chain D: S.417, L.420
- Chain E: D.168, H.235, H.236
- Ligands: CD.101
Ligand excluded by PLIPACY.143: 7 residues within 4Å:- Chain F: A.17, L.18, K.19, K.20, N.21, E.22
- Ligands: CD.119
Ligand excluded by PLIPACY.144: 7 residues within 4Å:- Chain B: P.491, S.493, H.494
- Chain F: Q.187, D.189
- Ligands: CD.121, ACY.148
Ligand excluded by PLIPACY.145: 3 residues within 4Å:- Chain D: N.216
- Chain F: E.490, H.494
Ligand excluded by PLIPACY.146: 7 residues within 4Å:- Chain C: L.181, E.182, S.185
- Chain F: K.174, Q.178, E.182
- Ligands: ACY.89
Ligand excluded by PLIPACY.147: 10 residues within 4Å:- Chain C: G.171, L.172, K.174, E.182, F.255
- Chain F: E.182, R.186
- Ligands: CD.54, ACY.90, CD.120
Ligand excluded by PLIPACY.148: 6 residues within 4Å:- Chain B: P.491, H.494
- Chain F: D.189, R.190
- Ligands: CD.121, ACY.144
Ligand excluded by PLIPACY.149: 6 residues within 4Å:- Chain A: S.417, L.420
- Chain F: D.168, H.235, H.236
- Ligands: CD.117
Ligand excluded by PLIPACY.150: 3 residues within 4Å:- Chain E: D.71, R.73
- Ligands: CD.113
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ullrich, T.C. et al., Crystal structure of ATP sulfurylase from Saccharomyces cerevisiae, a key enzyme in sulfate activation. EMBO J. (2001)
- Release Date
- 2001-05-23
- Peptides
- SULFATE ADENYLYLTRANSFERASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 33 x CD: CADMIUM ION(Non-covalent)
- 18 x CA: CALCIUM ION(Non-covalent)
- 36 x NA: SODIUM ION(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x ADX: ADENOSINE-5'-PHOSPHOSULFATE(Non-covalent)
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 45 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ullrich, T.C. et al., Crystal structure of ATP sulfurylase from Saccharomyces cerevisiae, a key enzyme in sulfate activation. EMBO J. (2001)
- Release Date
- 2001-05-23
- Peptides
- SULFATE ADENYLYLTRANSFERASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B