SMTL ID : 1g96.2 (1 other biounit)

HUMAN CYSTATIN C; DIMERIC FORM WITH 3D DOMAIN SWAPPING

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-octamer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.13: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.15: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Y.34, D.40, S.44 Chain B: R.70, R.93, D.119 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.34, A:D.40, A:S.44, A:S.44, B:R.93 Water bridges: A:S.38, A:N.39 GOL.4: 6 residues within 4Å: Chain A: R.70, R.93, D.119 Chain B: Y.34, D.40, S.44 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:R.93, B:Y.34, B:D.40, B:S.44, B:S.44 Water bridges: B:S.38, B:N.39 GOL.6: 6 residues within 4Å: Chain C: Y.34, D.40, S.44 Chain D: R.70, R.93, D.119 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:S.44, C:S.44, D:R.93 Water bridges: C:S.38, C:N.39 GOL.8: 6 residues within 4Å: Chain C: R.70, R.93, D.119 Chain D: Y.34, D.40, S.44 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:S.44, D:S.44, C:R.93 Water bridges: D:S.38, D:N.39 GOL.10: 6 residues within 4Å: Chain E: Y.34, D.40, S.44 Chain F: R.70, R.93, D.119 7 PLIP interactions: 1 interactions with chain F, 6 interactions with chain E Hydrogen bonds: F:R.93, E:Y.34, E:D.40, E:S.44, E:S.44 Water bridges: E:S.38, E:N.39 GOL.12: 6 residues within 4Å: Chain E: R.70, R.93, D.119 Chain F: Y.34, D.40, S.44 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:S.44, F:S.44, E:R.93 Water bridges: F:S.38, F:N.39 GOL.14: 6 residues within 4Å: Chain G: Y.34, D.40, S.44 Chain H: R.70, R.93, D.119 7 PLIP interactions: 6 interactions with chain G, 1 interactions with chain H Hydrogen bonds: G:Y.34, G:D.40, G:S.44, G:S.44, H:R.93 Water bridges: G:S.38, G:N.39 GOL.16: 6 residues within 4Å: Chain G: R.70, R.93, D.119 Chain H: Y.34, D.40, S.44 5 PLIP interactions: 4 interactions with chain H, 1 interactions with chain G Hydrogen bonds: H:S.44, H:S.44, G:R.93 Water bridges: H:S.38, H:N.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Janowski, R. et al., Human cystatin C, an amyloidogenic protein, dimerizes through three-dimensional domain swapping. Nat.Struct.Biol. (2001)

Release Date

2001-04-06

Peptides

CYSTATIN C: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

CYSTATIN C

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