SMTL ID : 1ga8.1

CRYSTAL STRUCTURE OF GALACOSYLTRANSFERASE LGTC IN COMPLEX WITH DONOR AND ACCEPTOR SUGAR ANALOGS.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x BGC- Z9D: 4-deoxy-beta-D-xylo-hexopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-Z9D.1: 15 residues within 4Å: Chain A: I.76, H.78, I.79, D.130, F.132, V.133, N.153, Y.186, Q.189, P.211, T.212, C.246, G.247, P.248 Ligands: UPF.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.212, A:T.212, A:H.78, A:D.130, A:N.153, A:Q.189 Water bridges: A:T.212 Hydrophobic interactions: A:Y.186

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.103, D.105, H.244 Ligands: UPF.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.103, A:D.105, A:D.105, A:H.244

1 x UPF: URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE(Non-covalent)

UPF.3: 27 residues within 4Å: Chain A: A.6, A.7, D.8, N.10, Y.11, H.78, I.79, S.80, T.82, T.83, R.86, D.103, I.104, D.105, N.153, A.154, G.155, Y.186, Q.187, D.188, Q.189, H.244, C.246, G.247, K.250 Ligands: BGC-Z9D.1, MN.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:A.6, A:D.8, A:D.8, A:N.10, A:S.80, A:T.83, A:R.86, A:R.86, A:I.104, A:Y.186, A:Q.187, A:D.188, A:Q.189, A:G.247, A:G.247 Water bridges: A:A.6 Salt bridges: A:H.78, A:H.78, A:K.250, A:K.250 pi-Stacking: A:Y.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Persson, K. et al., Crystal structure of the retaining galactosyltransferase LgtC from Neisseria meningitidis in complex with donor and acceptor sugar analogs. Nat.Struct.Biol. (2001)

Release Date

2001-02-14

Peptides

GALACTOSYL TRANSFERASE LGTC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GALACTOSYL TRANSFERASE LGTC

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