SMTL ID : 1gcb.1

GAL6, YEAST BLEOMYCIN HYDROLASE DNA-BINDING PROTEASE (THIOL)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: N.66, G.395, K.396 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: I.126, R.192, K.196 Chain F: Y.362 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: K.175, S.178 Chain F: P.328, K.329 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: N.66, G.395, K.396 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: I.126, R.192, K.196 Chain E: Y.362 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: K.175, S.178 Chain E: P.328, K.329 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain C: N.66, G.395, K.396 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain C: I.126, R.192, K.196 Chain D: Y.362 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain C: K.175, S.178 Chain D: P.328, K.329 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain D: N.66, G.395, K.396 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain C: Y.362 Chain D: I.126, R.192, K.196 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain C: P.328, K.329 Chain D: K.175, S.178 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain E: N.66, G.395, K.396 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain B: Y.362 Chain E: I.126, R.192, K.196 Ligand excluded by PLIP SO4.35: 4 residues within 4Å: Chain B: P.328, K.329 Chain E: K.175, S.178 Ligand excluded by PLIP SO4.41: 3 residues within 4Å: Chain F: N.66, G.395, K.396 Ligand excluded by PLIP SO4.42: 4 residues within 4Å: Chain A: Y.362 Chain F: I.126, R.192, K.196 Ligand excluded by PLIP SO4.43: 4 residues within 4Å: Chain A: P.328, K.329 Chain F: K.175, S.178 Ligand excluded by PLIP

24 x HG: MERCURY (II) ION(Non-covalent)

HG.4: 4 residues within 4Å: Chain A: F.411, C.415, F.416, Q.417 Ligand excluded by PLIP HG.5: 5 residues within 4Å: Chain A: T.55, C.376, H.377, V.378 Ligands: HG.6 Ligand excluded by PLIP HG.6: 4 residues within 4Å: Chain A: V.312, C.376, P.385 Ligands: HG.5 Ligand excluded by PLIP HG.7: 4 residues within 4Å: Chain A: G.71, C.73, T.368, A.453 Ligand excluded by PLIP HG.12: 4 residues within 4Å: Chain B: F.411, C.415, F.416, Q.417 Ligand excluded by PLIP HG.13: 5 residues within 4Å: Chain B: T.55, C.376, H.377, V.378 Ligands: HG.14 Ligand excluded by PLIP HG.14: 4 residues within 4Å: Chain B: V.312, C.376, P.385 Ligands: HG.13 Ligand excluded by PLIP HG.15: 4 residues within 4Å: Chain B: G.71, C.73, T.368, A.453 Ligand excluded by PLIP HG.20: 4 residues within 4Å: Chain C: F.411, C.415, F.416, Q.417 Ligand excluded by PLIP HG.21: 5 residues within 4Å: Chain C: T.55, C.376, H.377, V.378 Ligands: HG.22 Ligand excluded by PLIP HG.22: 4 residues within 4Å: Chain C: V.312, C.376, P.385 Ligands: HG.21 Ligand excluded by PLIP HG.23: 4 residues within 4Å: Chain C: G.71, C.73, T.368, A.453 Ligand excluded by PLIP HG.28: 4 residues within 4Å: Chain D: F.411, C.415, F.416, Q.417 Ligand excluded by PLIP HG.29: 5 residues within 4Å: Chain D: T.55, C.376, H.377, V.378 Ligands: HG.30 Ligand excluded by PLIP HG.30: 4 residues within 4Å: Chain D: V.312, C.376, P.385 Ligands: HG.29 Ligand excluded by PLIP HG.31: 4 residues within 4Å: Chain D: G.71, C.73, T.368, A.453 Ligand excluded by PLIP HG.36: 4 residues within 4Å: Chain E: F.411, C.415, F.416, Q.417 Ligand excluded by PLIP HG.37: 5 residues within 4Å: Chain E: T.55, C.376, H.377, V.378 Ligands: HG.38 Ligand excluded by PLIP HG.38: 4 residues within 4Å: Chain E: V.312, C.376, P.385 Ligands: HG.37 Ligand excluded by PLIP HG.39: 4 residues within 4Å: Chain E: G.71, C.73, T.368, A.453 Ligand excluded by PLIP HG.44: 4 residues within 4Å: Chain F: F.411, C.415, F.416, Q.417 Ligand excluded by PLIP HG.45: 5 residues within 4Å: Chain F: T.55, C.376, H.377, V.378 Ligands: HG.46 Ligand excluded by PLIP HG.46: 4 residues within 4Å: Chain F: V.312, C.376, P.385 Ligands: HG.45 Ligand excluded by PLIP HG.47: 4 residues within 4Å: Chain F: G.71, C.73, T.368, A.453 Ligand excluded by PLIP

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 8 residues within 4Å: Chain A: Q.81, L.82, N.85, K.262, P.268, R.314, K.319, D.421 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.81, A:N.85, A:K.262, A:R.314, A:K.319, A:K.319 Water bridges: A:Q.81, A:Y.145 GOL.16: 8 residues within 4Å: Chain B: Q.81, L.82, N.85, K.262, P.268, R.314, K.319, D.421 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Q.81, B:N.85, B:K.262, B:R.314, B:K.319, B:K.319 Water bridges: B:Q.81, B:Y.145 GOL.24: 8 residues within 4Å: Chain C: Q.81, L.82, N.85, K.262, P.268, R.314, K.319, D.421 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Q.81, C:N.85, C:K.262, C:R.314, C:K.319, C:K.319 Water bridges: C:Q.81, C:Y.145 GOL.32: 8 residues within 4Å: Chain D: Q.81, L.82, N.85, K.262, P.268, R.314, K.319, D.421 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:Q.81, D:N.85, D:K.262, D:R.314, D:K.319, D:K.319 Water bridges: D:Q.81, D:Y.145 GOL.40: 8 residues within 4Å: Chain E: Q.81, L.82, N.85, K.262, P.268, R.314, K.319, D.421 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:Q.81, E:N.85, E:K.262, E:R.314, E:K.319, E:K.319 Water bridges: E:Q.81, E:Y.145 GOL.48: 8 residues within 4Å: Chain F: Q.81, L.82, N.85, K.262, P.268, R.314, K.319, D.421 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:Q.81, F:N.85, F:K.262, F:R.314, F:K.319, F:K.319 Water bridges: F:Q.81, F:Y.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joshua-Tor, L. et al., Crystal structure of a conserved protease that binds DNA: the bleomycin hydrolase, Gal6. Science (1995)

Release Date

1995-10-15

Peptides

GAL6 HG (EMTS) DERIVATIVE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

GAL6 HG (EMTS) DERIVATIVE