- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GLC: alpha-D-glucopyranose(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.3: 28 residues within 4Å:- Chain A: G.9, Q.12, G.13, I.14, D.33, Y.34, N.35, V.58, D.59, V.60, N.86, A.87, G.88, I.109, A.137, C.138, S.139, Y.152, K.156, P.182, G.183, I.184, V.185, T.187, P.188, M.189, W.190
- Ligands: BME.4
23 PLIP interactions:23 interactions with chain A- Hydrophobic interactions: A:P.182
- Hydrogen bonds: A:G.11, A:Q.12, A:Q.12, A:I.14, A:Y.34, A:D.59, A:V.60, A:N.86, A:Y.152, A:K.156, A:V.185, A:V.185, A:T.187, A:T.187, A:M.189, A:W.190
- Water bridges: A:Q.12, A:G.15, A:N.35, A:N.86
- pi-Stacking: A:Y.34, A:Y.34
NAD.7: 28 residues within 4Å:- Chain B: G.9, Q.12, G.13, I.14, D.33, Y.34, N.35, V.58, D.59, V.60, N.86, A.87, G.88, I.109, A.137, C.138, S.139, Y.152, K.156, P.182, G.183, I.184, V.185, T.187, P.188, M.189, W.190
- Ligands: BME.8
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:P.182, B:V.185
- Hydrogen bonds: B:G.11, B:Q.12, B:Q.12, B:I.14, B:Y.34, B:D.59, B:D.59, B:V.60, B:N.86, B:K.156, B:V.185, B:V.185, B:T.187, B:M.189, B:W.190
- Water bridges: B:Q.12, B:G.15, B:G.15, B:D.33
NAD.10: 28 residues within 4Å:- Chain C: G.9, Q.12, G.13, I.14, D.33, Y.34, N.35, V.58, D.59, V.60, N.86, A.87, G.88, I.109, A.137, C.138, S.139, Y.152, K.156, P.182, G.183, I.184, V.185, T.187, P.188, M.189, W.190
- Ligands: BME.11
19 PLIP interactions:19 interactions with chain C- Hydrophobic interactions: C:P.182, C:V.185
- Hydrogen bonds: C:G.9, C:Q.12, C:Q.12, C:I.14, C:Y.34, C:D.59, C:V.60, C:N.86, C:K.156, C:V.185, C:V.185, C:T.187, C:T.187
- Water bridges: C:Q.12, C:G.15, C:G.15, C:T.38
NAD.13: 28 residues within 4Å:- Chain D: G.9, Q.12, G.13, I.14, D.33, Y.34, N.35, V.58, D.59, V.60, N.86, A.87, G.88, I.109, A.137, C.138, S.139, Y.152, K.156, P.182, G.183, I.184, V.185, T.187, P.188, M.189, W.190
- Ligands: BME.14
25 PLIP interactions:25 interactions with chain D- Hydrophobic interactions: D:P.182, D:V.185
- Hydrogen bonds: D:G.9, D:G.11, D:Q.12, D:Q.12, D:I.14, D:Y.34, D:D.59, D:D.59, D:V.60, D:N.86, D:Y.152, D:K.156, D:V.185, D:V.185, D:T.187, D:M.189, D:W.190
- Water bridges: D:Q.12, D:G.15, D:G.15, D:D.33
- pi-Stacking: D:Y.34, D:Y.34
- 4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.4: 7 residues within 4Å:- Chain A: S.139, Q.140, Y.152, P.182, G.183, W.190
- Ligands: NAD.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.140
BME.8: 7 residues within 4Å:- Chain B: S.139, Q.140, Y.152, P.182, G.183, W.190
- Ligands: NAD.7
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.140
BME.11: 7 residues within 4Å:- Chain C: S.139, Q.140, Y.152, P.182, G.183, W.190
- Ligands: NAD.10
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Q.140
BME.14: 7 residues within 4Å:- Chain D: S.139, Q.140, Y.152, P.182, G.183, W.190
- Ligands: NAD.13
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Q.140
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Otagiri, M. et al., Crystal structure of meso-2,3-butanediol dehydrogenase in a complex with NAD+ and inhibitor mercaptoethanol at 1.7 A resolution for understanding of chiral substrate recognition mechanisms. J.Biochem. (2001)
- Release Date
- 2001-02-28
- Peptides
- ACETOIN REDUCTASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GLC: alpha-D-glucopyranose(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Otagiri, M. et al., Crystal structure of meso-2,3-butanediol dehydrogenase in a complex with NAD+ and inhibitor mercaptoethanol at 1.7 A resolution for understanding of chiral substrate recognition mechanisms. J.Biochem. (2001)
- Release Date
- 2001-02-28
- Peptides
- ACETOIN REDUCTASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D