SMTL ID : 1get.1

ANATOMY OF AN ENGINEERED NAD-BINDING SITE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 37 residues within 4Å: Chain A: I.10, G.11, G.13, S.14, G.15, I.33, E.34, A.35, K.36, E.37, G.40, T.41, C.42, V.45, G.46, C.47, K.50, G.113, F.114, A.115, A.138, T.139, G.140, S.157, I.178, R.263, I.270, G.302, D.303, E.309, L.310, T.311, P.312, A.314 Chain B: H.439, P.440 Ligands: NAP.2 27 PLIP interactions: 24 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.178 Hydrogen bonds: A:G.12, A:S.14, A:G.15, A:A.35, A:K.36, A:T.41, A:T.41, A:C.42, A:K.50, A:A.115, A:A.115, A:D.303, A:E.309, A:T.311, A:T.311, B:H.439 Water bridges: A:G.13, A:G.16, A:E.37, A:G.40, A:G.141, A:G.141, A:N.304, A:A.314, B:H.439, B:H.439 FAD.3: 35 residues within 4Å: Chain A: H.439, P.440 Chain B: I.10, G.11, G.12, G.13, S.14, G.15, I.33, E.34, A.35, K.36, G.40, T.41, C.42, V.45, G.46, C.47, K.50, G.113, F.114, A.115, A.138, T.139, G.140, I.178, R.263, I.270, G.302, D.303, E.309, L.310, T.311, P.312 Ligands: NAP.4 26 PLIP interactions: 23 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.178 Hydrogen bonds: B:S.14, B:S.14, B:G.15, B:A.35, B:K.36, B:T.41, B:T.41, B:T.41, B:C.42, B:K.50, B:A.115, B:A.115, B:D.303, B:E.309, B:T.311, B:T.311, A:H.439 Water bridges: B:G.13, B:E.37, B:G.40, B:G.141, B:N.304, B:A.314, A:H.439, A:H.439

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 19 residues within 4Å: Chain A: K.50, V.173, G.174, A.175, G.176, Y.177, I.178, E.181, R.198, R.204, P.231, A.260, I.261, G.262, E.309, L.310, T.341, V.342 Ligands: FAD.1 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:Y.177, A:Y.177, A:I.178 Hydrogen bonds: A:K.50, A:K.50, A:A.175, A:I.178, A:R.198, A:G.262, A:E.309 Water bridges: A:G.176, A:Y.177, A:A.179, A:K.199, A:R.204, A:R.204, A:I.261, A:R.263, A:R.263, A:V.342, A:V.342 Salt bridges: A:R.198, A:R.204 pi-Cation interactions: A:R.198, A:R.198 NAP.4: 19 residues within 4Å: Chain B: V.173, G.174, A.175, G.176, Y.177, I.178, E.181, R.198, R.204, P.231, I.261, G.262, R.263, E.309, L.310, T.341, V.342, V.343 Ligands: FAD.3 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:Y.177, B:Y.177, B:I.178 Hydrogen bonds: B:A.175, B:I.178, B:R.198, B:R.198, B:G.262, B:E.309, B:V.342 Water bridges: B:G.176, B:Y.177, B:Y.177, B:Y.177, B:A.179, B:R.198, B:K.199, B:I.261, B:R.263, B:V.342 Salt bridges: B:R.198, B:R.204 pi-Cation interactions: B:R.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mittl, P.R. et al., Anatomy of an engineered NAD-binding site. Protein Sci. (1994)

Release Date

1994-11-01

Peptides

GLUTATHIONE REDUCTASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLUTATHIONE REDUCTASE

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