SMTL ID : 1ggy.1

HUMAN FACTOR XIII WITH YTTERBIUM BOUND IN THE ION SITE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

8 x YB: YTTERBIUM (III) ION(Non-covalent)(Non-functional Binders)

YB.1: 3 residues within 4Å: Chain A: N.436, E.485, E.490 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.485, A:E.485, H2O.1, H2O.4 YB.2: 5 residues within 4Å: Chain A: D.270, D.271 Ligands: YB.3, YB.4, YB.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.270 YB.3: 4 residues within 4Å: Chain A: D.271 Ligands: YB.2, YB.4, YB.7 No protein-ligand interaction detected (PLIP) YB.4: 3 residues within 4Å: Ligands: YB.2, YB.3, YB.7 No protein-ligand interaction detected (PLIP) YB.5: 1 residues within 4Å: Chain A: D.574 No protein-ligand interaction detected (PLIP) YB.6: 4 residues within 4Å: Chain B: N.436, E.485, E.490 Ligands: YB.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.485, B:E.485, B:E.490, B:E.490 YB.7: 4 residues within 4Å: Chain B: D.270 Ligands: YB.2, YB.3, YB.4 No protein-ligand interaction detected (PLIP) YB.8: 6 residues within 4Å: Chain B: N.436, D.438, A.457, E.485, E.490 Ligands: YB.6 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.485, B:E.485

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fox, B.A. et al., Identification of the calcium binding site and a novel ytterbium site in blood coagulation factor XIII by x-ray crystallography. J.Biol.Chem. (1999)

Release Date

1999-02-16

Peptides

PROTEIN (COAGULATION FACTOR XIII): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (COAGULATION FACTOR XIII)

Related Entries With Identical Sequence