SMTL ID : 1gkc.2 (1 other biounit)

MMP9-inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.77, G.78, D.80, L.82, D.100, E.103 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.77, A:G.78, A:L.82, A:D.100, A:E.103 CA.2: 4 residues within 4Å: Chain A: D.60, G.92, Q.94, D.96 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.60, A:G.92, A:Q.94, A:D.96, H2O.2, H2O.2 CA.3: 3 residues within 4Å: Chain A: D.26, D.101, E.103 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.26, A:D.101, A:D.101, A:E.103, H2O.1 CA.4: 6 residues within 4Å: Chain A: S.106, L.107, G.108, K.109, G.110, Q.111 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.107, A:K.109, H2O.2 CA.5: 2 residues within 4Å: Chain A: S.44, T.47 No protein-ligand interaction detected (PLIP)

1 x NFH: N~2~-[(2R)-2-{[formyl(hydroxy)amino]methyl}-4-methylpentanoyl]-N,3-dimethyl-L-valinamide(Non-covalent)

NFH.6: 15 residues within 4Å: Chain A: G.81, L.82, L.83, A.84, H.85, Y.113, H.121, E.122, H.125, H.131, Y.140, P.141, M.142, Y.143 Ligands: ZN.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.81, A:P.141, A:Y.143 Water bridges: A:G.81

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 4 residues within 4Å: Chain A: H.121, H.125, H.131 Ligands: NFH.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.121, A:H.125, A:H.131 ZN.8: 4 residues within 4Å: Chain A: H.70, D.72, H.85, H.98 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.70, A:D.72, A:H.85, A:H.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rowsell, S. et al., Crystal Structure of Mmp9 in Complex with a Reverse Hydroxamate Inhibitor. J.Mol.Biol. (2002)

Release Date

2002-05-16

Peptides

92 KDA TYPE IV COLLAGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

92 KDA TYPE IV COLLAGENASE

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