SMTL ID : 1gkz.1

Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) complxed with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.249, H.334 Ligands: ADP.5 No protein-ligand interaction detected (PLIP)

1 x K: POTASSIUM ION(Non-covalent)

K.2: 6 residues within 4Å: Chain A: V.298, D.300, F.303, G.337, P.341 Ligands: ADP.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:V.298, A:D.300, A:F.303, A:G.337

2 x XE: XENON(Non-covalent)

XE.3: 3 residues within 4Å: Chain A: L.68, I.170 Ligands: XE.4 No protein-ligand interaction detected (PLIP) XE.4: 2 residues within 4Å: Chain A: H.132 Ligands: XE.3 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 21 residues within 4Å: Chain A: N.249, R.252, A.253, D.285, G.289, I.290, V.298, F.303, T.304, T.305, H.334, G.335, F.336, G.337, F.338, G.339, L.340, P.341, T.364 Ligands: MG.1, K.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.249, A:R.252, A:D.285, A:T.304, A:T.304, A:T.305, A:T.305, A:T.305, A:F.336, A:G.337, A:L.340 Water bridges: A:N.249, A:A.253, A:D.285, A:F.338, A:F.338, A:T.364 Salt bridges: A:H.334

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: F.234, I.235 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: R.80 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: L.93 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Machius, M. et al., Structure of Rat Bckd Kinase: Nucleotide-Induced Domain Communication in a Mitochondrial Protein Kinase. Proc.Natl.Acad.Sci.USA (2001)

Release Date

2001-10-11

Peptides

[3-METHYL-2-OXOBUTANOATE DEHYDROGENASE [LIPOAMIDE]] KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

[3-METHYL-2-OXOBUTANOATE DEHYDROGENASE [LIPOAMIDE]] KINASE

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