SMTL ID : 1gl4.1

Nidogen-1 G2/Perlecan IG3 Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.159, H.161, H.163 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.159, A:H.161, A:H.163

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 4 residues within 4Å: Chain B: L.48, H.49, Q.89, T.91 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.49 Water bridges: B:N.50, B:N.50 Salt bridges: B:H.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kvansakul, M. et al., Structural Basis for the High-Affinity Interaction of Nidogen-1 with Immunoglobulin-Like Domain 3 of Perlecan. Embo J. (2001)

Release Date

2001-11-28

Peptides

NIDOGEN-1: A
BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NIDOGEN-1

BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN