SMTL ID : 1gl6.1

Plasmid coupling protein TrwB in complex with the non-hydrolysable GTP analogue GDPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

7 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 10 residues within 4Å: Chain A: T.61, G.62, G.64, K.65, S.66, V.67, D.401, I.421 Chain B: R.53, R.304 15 PLIP interactions: 12 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:T.61, A:G.62, A:G.62, A:G.64, A:K.65, A:S.66, A:S.66, A:S.66, A:S.66, A:V.67, B:R.53, B:R.304, B:R.304 Water bridges: A:R.70, A:R.70 GNP.3: 11 residues within 4Å: Chain B: T.61, G.62, G.64, K.65, S.66, V.67, L.402, I.421, Q.423 Chain C: R.53, R.304 17 PLIP interactions: 5 interactions with chain C, 12 interactions with chain B Hydrogen bonds: C:R.53, C:R.53, C:R.304, C:R.304, C:R.304, B:G.62, B:G.62, B:G.64, B:K.65, B:S.66, B:S.66, B:S.66, B:S.66, B:V.67, B:Q.423, B:Q.423 Water bridges: B:R.70 GNP.4: 11 residues within 4Å: Chain C: T.61, G.62, G.64, K.65, S.66, V.67, L.402, I.421, Q.423 Chain D: R.53, R.304 16 PLIP interactions: 14 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.62, C:G.62, C:G.64, C:K.65, C:S.66, C:S.66, C:S.66, C:S.66, C:V.67, D:R.53, D:R.304 Water bridges: C:T.61, C:S.66, C:R.70, C:R.70, C:R.70 GNP.5: 11 residues within 4Å: Chain D: T.61, G.62, G.64, K.65, S.66, V.67, L.402, I.421, Q.423 Chain E: R.53, R.304 18 PLIP interactions: 5 interactions with chain E, 13 interactions with chain D Hydrogen bonds: E:R.53, E:R.53, E:R.304, D:T.61, D:G.62, D:G.62, D:G.64, D:S.66, D:S.66, D:S.66, D:S.66, D:V.67, D:Q.423 Water bridges: E:R.304, E:R.304, D:S.66, D:Q.423, D:Q.423 GNP.7: 3 residues within 4Å: Chain A: A.382 Chain C: R.368 Chain D: R.368 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:R.368, D:R.368, D:R.368, D:R.368 GNP.8: 11 residues within 4Å: Chain E: T.61, G.62, G.64, K.65, S.66, V.67, L.402, I.421, Q.423 Chain F: R.53, R.304 14 PLIP interactions: 2 interactions with chain F, 12 interactions with chain E Hydrogen bonds: F:R.53, F:R.304, E:T.61, E:G.62, E:G.64, E:S.66, E:S.66, E:S.66, E:S.66, E:V.67, E:Q.423, E:Q.423 Water bridges: E:R.70, E:R.70 GNP.9: 11 residues within 4Å: Chain A: R.53, R.304 Chain F: T.61, G.62, G.64, K.65, S.66, V.67, D.401, L.402, I.421 12 PLIP interactions: 3 interactions with chain A, 9 interactions with chain F Hydrogen bonds: A:R.53, A:R.53, A:R.304, F:T.61, F:G.62, F:G.62, F:G.64, F:S.66, F:S.66, F:S.66, F:S.66, F:V.67

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.6: 5 residues within 4Å: Chain D: E.7, S.24, G.26, K.27, R.30 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.24, D:R.30, D:R.30 Salt bridges: D:E.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomis-Ruth, F.X. et al., The Bacterial Conjugation Protein Trwb Resembles Ring Helicases and F1-ATPase. Nature (2001)

Release Date

2002-05-16

Peptides

ATPASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

E
F

F
G

ATPASE