SMTL ID : 1gl7.1

Plasmid coupling protein TrwB in complex with the non-hydrolisable ATP-analogue ADPNP.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-hexamer

Ligands

6 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 10 residues within 4Å: Chain A: T.62, G.63, T.64, G.65, K.66, S.67, V.68, I.422 Chain B: R.54, R.305 15 PLIP interactions: 11 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:T.62, A:G.63, A:G.63, A:T.64, A:G.65, A:K.66, A:S.67, A:S.67, A:S.67, A:S.67, A:V.68, B:R.54, B:R.305, B:R.305, B:R.305 ANP.3: 10 residues within 4Å: Chain B: T.62, G.63, G.65, K.66, S.67, V.68, I.422, Q.424 Chain C: R.54, R.305 15 PLIP interactions: 10 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:G.63, B:G.63, B:T.64, B:G.65, B:K.66, B:S.67, B:S.67, B:S.67, B:S.67, B:V.68, C:R.54, C:R.54, C:R.305, C:R.305, C:R.305 ANP.4: 10 residues within 4Å: Chain C: T.62, G.63, G.65, K.66, S.67, V.68, I.422, Q.424 Chain D: R.54, R.305 15 PLIP interactions: 11 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:G.63, C:T.64, C:G.65, C:K.66, C:S.67, C:S.67, C:S.67, C:S.67, C:V.68, C:Q.424, C:Q.424, D:R.54, D:R.54, D:R.305, D:R.305 ANP.5: 11 residues within 4Å: Chain D: T.62, G.63, T.64, G.65, K.66, S.67, V.68, I.422, Q.424 Chain E: R.54, R.305 15 PLIP interactions: 10 interactions with chain D, 5 interactions with chain E Hydrogen bonds: D:G.63, D:T.64, D:G.65, D:S.67, D:S.67, D:S.67, D:S.67, D:V.68, D:Q.424, D:Q.424, E:R.54, E:R.54, E:R.305, E:R.305, E:R.305 ANP.6: 11 residues within 4Å: Chain E: T.62, G.63, T.64, G.65, K.66, S.67, V.68, I.422, Q.424 Chain F: R.54, R.305 13 PLIP interactions: 10 interactions with chain E, 3 interactions with chain F Hydrogen bonds: E:T.62, E:G.63, E:T.64, E:G.65, E:S.67, E:S.67, E:S.67, E:S.67, E:V.68, E:Q.424, F:R.54, F:R.54, F:R.305 ANP.7: 9 residues within 4Å: Chain A: R.54, R.305 Chain F: T.62, G.63, G.65, K.66, S.67, V.68, I.422 14 PLIP interactions: 10 interactions with chain F, 4 interactions with chain A Hydrogen bonds: F:T.62, F:G.63, F:G.63, F:G.65, F:K.66, F:S.67, F:S.67, F:S.67, F:S.67, F:V.68, A:R.54, A:R.54, A:R.305, A:R.305

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomis-Ruth, F.X. et al., The Bacterial Conjugation Protein Trwb Resembles Ring Helicases and F1-ATPase. Nature (2001)

Release Date

2002-05-16

Peptides

CONJUGAL TRANSFER PROTEIN TRWB: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

E
F

F
G

CONJUGAL TRANSFER PROTEIN TRWB

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