SMTL ID : 1gm5.1

Structure of RecG bound to three-way DNA junction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.24 Å

Oligo State

monomer

Ligands

1 x DG- DA- DG- DC- DA- DC- DT- DG- DC: DNA (5'-(*GP*AP*GP*CP*AP*CP*TP*GP*C)-3')(Non-covalent)

DG-DA-DG-DC-DA-DC-DT-DG-DC.1: 19 residues within 4Å: Chain A: Q.118, A.120, K.121, G.122, V.123, G.124, P.125, N.126, R.127 Chain C: G.1, C.2, A.3, G.4, T.5, G.6, C.7, T.8, C.9, G.10 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.205, A:Q.206, A:Y.208 Hydrogen bonds: A:Y.208, A:S.265 pi-Stacking: A:Y.208, A:Y.208 pi-Cation interactions: A:Y.208

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 13 residues within 4Å: Chain A: F.367, L.369, Q.373, V.398, G.399, S.400, G.401, K.402, T.403, V.404, R.436, P.549 Ligands: MG.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:L.369, A:L.369, A:Q.373, A:D.397, A:G.399, A:S.400, A:G.401, A:K.402, A:T.403, A:T.403, A:T.403 Salt bridges: A:R.436 pi-Stacking: A:F.367, A:F.367

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: T.403, M.522 Ligands: ADP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singleton, M.R. et al., Structural Analysis of DNA Replication Fork Reversal by Recg. Cell(Cambridge,Mass.) (2001)

Release Date

2001-10-03

Peptides

RECG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RECG