SMTL ID : 1gnm.1

HIV-1 PROTEASE MUTANT WITH VAL 82 REPLACED BY ASP (V82D) COMPLEXED WITH U89360E (INHIBITOR)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x U0E: N-[[1-[N-ACETAMIDYL]-[1-CYCLOHEXYLMETHYL-2-HYDROXY-4-ISOPROPYL]-BUT-4-YL]-CARBONYL]-GLUTAMINYL-ARGINYL-AMIDE(Non-covalent)

U0E.1: 21 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, G.48, G.49, D.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, P.81, D.82 Ligands: U0E.2 20 PLIP interactions: 6 interactions with chain A, 14 interactions with chain B Hydrophobic interactions: A:L.23, A:I.84, B:L.23, B:A.28, B:I.47, B:I.50, B:P.81, B:D.82 Hydrogen bonds: A:R.8, A:R.8, A:I.50, B:G.27, B:D.29, B:D.30, B:D.30, B:D.30, B:G.48, B:G.48, B:I.50 Salt bridges: A:D.82 U0E.2: 20 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, D.82, I.84 Chain B: R.8, D.25, G.27, G.48, G.49, I.50 Ligands: U0E.1 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.50, A:P.81, A:I.84, B:I.50 Hydrogen bonds: A:D.29, A:D.29, A:D.29, A:D.30, A:D.30, A:G.48, A:G.48, A:G.48, A:I.50, B:G.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, L. et al., Crystal structures of complexes of a peptidic inhibitor with wild-type and two mutant HIV-1 proteases. Biochemistry (1996)

Release Date

1996-11-08

Peptides

HIV-1 PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 PROTEASE