SMTL ID : 1gox.2 (1 other biounit)

REFINED STRUCTURE OF SPINACH GLYCOLATE OXIDASE AT 2 ANGSTROMS RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-octamer

Ligands

8 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 21 residues within 4Å: Chain A: Y.25, Y.26, A.77, P.78, T.79, A.80, Q.128, Y.130, T.156, K.231, S.253, H.255, G.256, R.258, D.286, G.287, G.288, R.290, I.308, G.309, R.310 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.25, A:Y.26, A:T.79, A:A.80, A:R.310 Hydrogen bonds: A:P.78, A:Q.128, A:Y.130, A:T.156, A:T.156, A:K.231, A:K.231, A:K.231, A:S.253, A:G.288, A:G.309, A:R.310 Water bridges: A:N.254, A:H.255, A:R.258, A:V.289, A:V.289, A:R.310, A:R.310 Salt bridges: A:R.290, A:R.310 pi-Stacking: A:H.255 FMN.2: 21 residues within 4Å: Chain B: Y.25, Y.26, A.77, P.78, T.79, A.80, Q.128, Y.130, T.156, K.231, S.253, H.255, G.256, R.258, D.286, G.287, G.288, R.290, I.308, G.309, R.310 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:Y.25, B:Y.26, B:T.79, B:A.80, B:R.310 Hydrogen bonds: B:P.78, B:Q.128, B:Y.130, B:T.156, B:T.156, B:K.231, B:K.231, B:K.231, B:S.253, B:G.288, B:G.309, B:R.310 Water bridges: B:N.254, B:H.255, B:R.258, B:V.289, B:V.289, B:R.310, B:R.310 Salt bridges: B:R.290, B:R.310 pi-Stacking: B:H.255 FMN.3: 21 residues within 4Å: Chain C: Y.25, Y.26, A.77, P.78, T.79, A.80, Q.128, Y.130, T.156, K.231, S.253, H.255, G.256, R.258, D.286, G.287, G.288, R.290, I.308, G.309, R.310 27 PLIP interactions: 27 interactions with chain C Hydrophobic interactions: C:Y.25, C:Y.26, C:T.79, C:A.80, C:R.310 Hydrogen bonds: C:P.78, C:Q.128, C:Y.130, C:T.156, C:T.156, C:K.231, C:K.231, C:K.231, C:S.253, C:G.288, C:G.309, C:R.310 Water bridges: C:N.254, C:H.255, C:R.258, C:V.289, C:V.289, C:R.310, C:R.310 Salt bridges: C:R.290, C:R.310 pi-Stacking: C:H.255 FMN.4: 21 residues within 4Å: Chain D: Y.25, Y.26, A.77, P.78, T.79, A.80, Q.128, Y.130, T.156, K.231, S.253, H.255, G.256, R.258, D.286, G.287, G.288, R.290, I.308, G.309, R.310 27 PLIP interactions: 27 interactions with chain D Hydrophobic interactions: D:Y.25, D:Y.26, D:T.79, D:A.80, D:R.310 Hydrogen bonds: D:P.78, D:Q.128, D:Y.130, D:T.156, D:T.156, D:K.231, D:K.231, D:K.231, D:S.253, D:G.288, D:G.309, D:R.310 Water bridges: D:N.254, D:H.255, D:R.258, D:V.289, D:V.289, D:R.310, D:R.310 Salt bridges: D:R.290, D:R.310 pi-Stacking: D:H.255 FMN.5: 21 residues within 4Å: Chain E: Y.25, Y.26, A.77, P.78, T.79, A.80, Q.128, Y.130, T.156, K.231, S.253, H.255, G.256, R.258, D.286, G.287, G.288, R.290, I.308, G.309, R.310 24 PLIP interactions: 24 interactions with chain E Hydrophobic interactions: E:Y.25, E:Y.26, E:T.79, E:A.80, E:R.310 Hydrogen bonds: E:P.78, E:Q.128, E:T.156, E:K.231, E:K.231, E:K.231, E:S.253, E:G.288, E:G.309, E:R.310 Water bridges: E:N.254, E:R.258, E:V.289, E:V.289, E:R.310, E:R.310 Salt bridges: E:R.290, E:R.310 pi-Stacking: E:H.255 FMN.6: 21 residues within 4Å: Chain F: Y.25, Y.26, A.77, P.78, T.79, A.80, Q.128, Y.130, T.156, K.231, S.253, H.255, G.256, R.258, D.286, G.287, G.288, R.290, I.308, G.309, R.310 24 PLIP interactions: 24 interactions with chain F Hydrophobic interactions: F:Y.25, F:Y.26, F:T.79, F:A.80, F:R.310 Hydrogen bonds: F:P.78, F:Q.128, F:T.156, F:K.231, F:K.231, F:K.231, F:S.253, F:G.288, F:G.309, F:R.310 Water bridges: F:N.254, F:R.258, F:V.289, F:V.289, F:R.310, F:R.310 Salt bridges: F:R.290, F:R.310 pi-Stacking: F:H.255 FMN.7: 21 residues within 4Å: Chain G: Y.25, Y.26, A.77, P.78, T.79, A.80, Q.128, Y.130, T.156, K.231, S.253, H.255, G.256, R.258, D.286, G.287, G.288, R.290, I.308, G.309, R.310 24 PLIP interactions: 24 interactions with chain G Hydrophobic interactions: G:Y.25, G:Y.26, G:T.79, G:A.80, G:R.310 Hydrogen bonds: G:P.78, G:Q.128, G:T.156, G:K.231, G:K.231, G:K.231, G:S.253, G:G.288, G:G.309, G:R.310 Water bridges: G:N.254, G:R.258, G:V.289, G:V.289, G:R.310, G:R.310 Salt bridges: G:R.290, G:R.310 pi-Stacking: G:H.255 FMN.8: 21 residues within 4Å: Chain H: Y.25, Y.26, A.77, P.78, T.79, A.80, Q.128, Y.130, T.156, K.231, S.253, H.255, G.256, R.258, D.286, G.287, G.288, R.290, I.308, G.309, R.310 24 PLIP interactions: 24 interactions with chain H Hydrophobic interactions: H:Y.25, H:Y.26, H:T.79, H:A.80, H:R.310 Hydrogen bonds: H:P.78, H:Q.128, H:T.156, H:K.231, H:K.231, H:K.231, H:S.253, H:G.288, H:G.309, H:R.310 Water bridges: H:N.254, H:R.258, H:V.289, H:V.289, H:R.310, H:R.310 Salt bridges: H:R.290, H:R.310 pi-Stacking: H:H.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lindqvist, Y., Refined structure of spinach glycolate oxidase at 2 A resolution. J.Mol.Biol. (1989)

Release Date

1989-10-15

Peptides

(S)-2-HYDROXY-ACID OXIDASE, PEROXISOMAL: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

(S)-2-HYDROXY-ACID OXIDASE, PEROXISOMAL

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