SMTL ID : 1gpe.1

GLUCOSE OXIDASE FROM PENICILLIUM AMAGASAKIENSE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-MAN.1: 13 residues within 4Å: Chain A: N.93, L.512, Q.513 Chain B: R.341, F.488, G.490, E.491, T.492, P.494, G.495, Y.496, N.497, Q.500 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.341, B:R.341, B:E.491, B:Y.496, B:R.341, B:Y.496 NAG-NAG-BMA-MAN-MAN.3: 13 residues within 4Å: Chain A: R.341, F.488, G.490, E.491, T.492, P.494, G.495, Y.496, N.497, Q.500 Chain B: I.91, N.93, Q.513 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.341, A:R.341, A:E.491, A:R.341, A:Y.496

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 9 residues within 4Å: Chain A: G.201, V.202, R.214, N.357, T.359, E.360, L.407, L.408, D.411 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 10 residues within 4Å: Chain B: L.200, G.201, V.202, R.214, N.357, T.359, E.360, L.407, L.408, D.411 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.200

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 6 residues within 4Å: Chain A: F.141, N.165, T.167, C.168, Q.206, C.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.165 NAG.6: 5 residues within 4Å: Chain A: N.392, T.394, A.395, E.531, L.532 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.395 Water bridges: A:H.391, A:N.392 NAG.8: 6 residues within 4Å: Chain B: N.165, T.167, C.168, Q.206, D.207, C.210 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.165, B:T.167, B:D.207 Water bridges: B:T.167 NAG.9: 5 residues within 4Å: Chain B: N.392, T.394, A.395, E.531, L.532 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.392, B:A.395

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.7: 41 residues within 4Å: Chain A: G.31, G.32, G.33, L.34, T.35, I.54, E.55, K.56, Y.73, F.77, Q.83, Y.85, K.99, G.101, K.102, G.103, G.105, G.106, S.107, T.108, N.111, G.112, D.113, S.114, Q.252, M.253, V.254, A.292, A.293, G.294, I.297, I.301, W.450, W.519, H.520, D.552, G.553, H.563, V.564, M.565, F.568 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:F.77, A:K.99, A:W.519, A:W.519 Hydrogen bonds: A:G.32, A:G.32, A:L.34, A:T.35, A:K.56, A:Q.83, A:G.101, A:G.103, A:G.105, A:G.106, A:S.107, A:N.111, A:G.112, A:S.114, A:S.114, A:V.254, A:V.254, A:G.553, A:H.563, A:V.564, A:M.565 Water bridges: A:G.33, A:G.36, A:S.107, A:S.114, A:S.295, A:T.566 pi-Cation interactions: A:H.520 FAD.10: 41 residues within 4Å: Chain B: G.31, G.32, G.33, L.34, T.35, I.54, E.55, K.56, Y.73, F.77, Q.83, Y.85, K.99, G.101, K.102, G.103, G.105, G.106, S.107, T.108, N.111, G.112, D.113, S.114, Q.252, M.253, V.254, A.292, A.293, G.294, I.297, I.301, W.450, W.519, H.520, D.552, G.553, H.563, V.564, M.565, F.568 32 PLIP interactions: 32 interactions with chain B Hydrophobic interactions: B:F.77, B:K.99, B:W.519, B:W.519 Hydrogen bonds: B:G.32, B:L.34, B:T.35, B:K.56, B:Q.83, B:G.101, B:G.103, B:G.105, B:G.106, B:S.107, B:N.111, B:G.112, B:S.114, B:S.114, B:V.254, B:V.254, B:G.553, B:V.564, B:M.565 Water bridges: B:G.33, B:T.35, B:Y.85, B:S.107, B:S.114, B:S.295, B:T.566 pi-Cation interactions: B:H.520, B:H.520

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wohlfahrt, G. et al., 1.8 and 1.9 A resolution structures of the Penicillium amagasakiense and Aspergillus niger glucose oxidases as a basis for modelling substrate complexes. Acta Crystallogr.,Sect.D (1999)

Release Date

1999-05-06

Peptides

PROTEIN (GLUCOSE OXIDASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (GLUCOSE OXIDASE)