- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.3: 2 residues within 4Å:- Ligands: POP.11, AMP.12
2 PLIP interactions:1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: AMP.12, H2O.321
MG.5: 3 residues within 4Å:- Chain C: D.239
- Ligands: POP.14, AMP.15
2 PLIP interactions:1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: AMP.15, H2O.598
MG.7: 3 residues within 4Å:- Chain D: D.239
- Ligands: POP.17, AMP.18
No protein-ligand interaction detected (PLIP)- 4 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.8: 7 residues within 4Å:- Chain A: S.235, G.237, V.238, D.239, S.240, K.381
- Ligands: AMP.9
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:S.235, A:V.238, A:D.239, A:S.240
- Water bridges: A:D.239, A:G.335, A:R.400, A:F.403
- Salt bridges: A:K.381
POP.11: 8 residues within 4Å:- Chain B: S.235, G.237, V.238, D.239, S.240, K.381
- Ligands: MG.3, AMP.12
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:S.235, B:S.235, B:G.237, B:V.238, B:D.239, B:D.239, B:S.240
- Water bridges: B:F.403
- Salt bridges: B:K.381
POP.14: 8 residues within 4Å:- Chain C: S.235, G.237, V.238, D.239, S.240, K.381
- Ligands: MG.5, AMP.15
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:S.235, C:S.235, C:G.237, C:V.238, C:D.239, C:D.239, C:S.240
- Water bridges: C:D.239, C:D.239
- Salt bridges: C:K.381
POP.17: 8 residues within 4Å:- Chain D: S.235, G.237, V.238, D.239, S.240, K.381
- Ligands: MG.7, AMP.18
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:S.235, D:S.235, D:G.237, D:V.238, D:D.239, D:D.239, D:S.240
- Water bridges: D:K.381, D:F.403
- Salt bridges: D:K.381
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.9: 9 residues within 4Å:- Chain A: G.233, L.234, S.235, S.240, V.258, V.260, F.315, G.405
- Ligands: POP.8
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.260, A:V.260
- Water bridges: A:G.233, A:G.335
AMP.12: 10 residues within 4Å:- Chain B: G.233, L.234, S.235, S.240, V.258, F.259, V.260, F.315
- Ligands: MG.3, POP.11
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.233, B:V.260, B:V.260
- Water bridges: B:S.235, B:S.235, B:F.403
AMP.15: 10 residues within 4Å:- Chain C: G.233, L.234, S.235, S.240, V.258, F.259, V.260, F.315
- Ligands: MG.5, POP.14
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.235, C:V.260, C:V.260
- Water bridges: C:G.233
AMP.18: 11 residues within 4Å:- Chain D: G.233, L.234, S.235, S.240, V.258, F.259, V.260, F.315, G.405
- Ligands: MG.7, POP.17
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:S.235, D:V.260, D:V.260
- Water bridges: D:G.233, D:G.405, D:G.405
- 4 x CIT: CITRIC ACID(Non-functional Binders)
CIT.10: 10 residues within 4Å:- Chain A: S.17, Q.18, G.58, G.59, P.60, C.86, Y.87, F.108, S.142, H.181
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:Q.18, A:Q.18, A:G.59, A:G.59, A:Y.87, A:S.142, A:S.142
- Water bridges: A:G.59, A:G.144, A:G.144
- Salt bridges: A:H.181
CIT.13: 10 residues within 4Å:- Chain B: S.17, Q.18, G.58, G.59, P.60, C.86, Y.87, F.108, S.142, H.181
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:Q.18, B:Q.18, B:G.59, B:G.59, B:Y.87, B:S.142, B:S.142
- Water bridges: B:G.58
- Salt bridges: B:H.181
CIT.16: 10 residues within 4Å:- Chain C: S.17, Q.18, G.58, G.59, P.60, C.86, Y.87, F.108, S.142, H.181
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:Q.18, C:Q.18, C:G.59, C:G.59, C:Y.87, C:S.142, C:S.142
- Salt bridges: C:H.181
CIT.19: 11 residues within 4Å:- Chain D: S.17, Q.18, G.58, G.59, P.60, C.86, Y.87, R.106, F.108, S.142, H.181
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:Q.18, D:Q.18, D:G.59, D:G.59, D:Y.87, D:S.142, D:S.142
- Water bridges: D:G.58, D:G.144
- Salt bridges: D:R.106, D:H.181
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tesmer, J.J. et al., The crystal structure of GMP synthetase reveals a novel catalytic triad and is a structural paradigm for two enzyme families. Nat.Struct.Biol. (1996)
- Release Date
- 1996-01-29
- Peptides
- GMP SYNTHETASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 4 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 4 x CIT: CITRIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tesmer, J.J. et al., The crystal structure of GMP synthetase reveals a novel catalytic triad and is a structural paradigm for two enzyme families. Nat.Struct.Biol. (1996)
- Release Date
- 1996-01-29
- Peptides
- GMP SYNTHETASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D