- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 8 residues within 4Å:- Chain A: Y.97, Y.122, H.126, R.129, S.195, L.196, W.467
- Ligands: EDO.5
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.97, A:R.129, A:R.129, A:S.195
EDO.4: 5 residues within 4Å:- Chain A: R.47, P.184, T.187, D.188, R.191
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.47, A:R.47, A:R.191
EDO.5: 8 residues within 4Å:- Chain A: Y.97, H.126, R.129, S.144, R.464, W.467, I.471
- Ligands: EDO.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.126, A:R.129, A:R.464, A:R.464, A:W.467
EDO.6: 7 residues within 4Å:- Chain A: Y.4, D.5, L.8, D.188, R.191, I.192, W.449
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.5, A:R.191, A:W.449
- Water bridges: A:D.5, A:R.191
EDO.7: 6 residues within 4Å:- Chain A: D.174, S.177, Y.181
- Chain B: G.451, Q.640, L.644
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:D.174, A:S.177, B:Q.640
- Water bridges: A:Y.181, A:Y.181, A:Y.186, B:N.448
EDO.8: 4 residues within 4Å:- Chain A: Q.623, D.627, K.642, Q.646
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.627, A:Q.646
- Water bridges: A:D.627, A:K.642
EDO.13: 8 residues within 4Å:- Chain B: Y.97, Y.122, H.126, R.129, S.195, L.196, W.467
- Ligands: EDO.18
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Y.97, B:Y.97, B:R.129, B:R.129, B:S.195
EDO.14: 4 residues within 4Å:- Chain B: R.47, T.187, D.188, R.191
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.47, B:R.47, B:R.191
EDO.15: 4 residues within 4Å:- Chain B: N.555, T.557, H.590, H.591
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.590, B:H.591
EDO.16: 7 residues within 4Å:- Chain B: Y.4, D.5, L.8, D.188, R.191, I.192, W.449
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.191, B:R.191, B:W.449
- Water bridges: B:D.5, B:L.8
EDO.17: 2 residues within 4Å:- Chain B: G.416, E.417
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.417
EDO.18: 8 residues within 4Å:- Chain B: Y.97, H.126, R.129, S.144, R.464, W.467, I.471
- Ligands: EDO.13
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:H.126, B:R.129, B:R.464, B:R.464, B:W.467
- 8 x CO: COBALT (II) ION(Non-covalent)
CO.9: 4 residues within 4Å:- Chain A: M.498, A.621, M.622, T.625
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:T.625
CO.10: 5 residues within 4Å:- Chain A: G.3, N.448, P.453, Q.456, R.637
No protein-ligand interaction detected (PLIP)CO.11: 3 residues within 4Å:- Chain A: N.603, W.605, R.669
No protein-ligand interaction detected (PLIP)CO.12: 4 residues within 4Å:- Chain A: N.158, N.160, V.162, W.698
No protein-ligand interaction detected (PLIP)CO.19: 4 residues within 4Å:- Chain B: M.498, A.621, M.622, T.625
No protein-ligand interaction detected (PLIP)CO.20: 5 residues within 4Å:- Chain B: G.3, N.448, P.453, Q.456, R.637
No protein-ligand interaction detected (PLIP)CO.21: 4 residues within 4Å:- Chain B: N.158, N.160, V.162, W.698
No protein-ligand interaction detected (PLIP)CO.22: 3 residues within 4Å:- Chain B: N.603, W.605, R.669
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nurizzo, D. et al., The Structural Basis for Catalysis and Specificity of the Pseudomonas Cellulosa Alpha-Glucuronidase, Glca67A. Structure (2002)
- Release Date
- 2002-09-26
- Peptides
- ALPHA-D-GLUCURONIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x CO: COBALT (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nurizzo, D. et al., The Structural Basis for Catalysis and Specificity of the Pseudomonas Cellulosa Alpha-Glucuronidase, Glca67A. Structure (2002)
- Release Date
- 2002-09-26
- Peptides
- ALPHA-D-GLUCURONIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B