- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x XYP- XYP: beta-D-xylopyranose-(1-1)-beta-D-xylopyranose(Non-covalent)
- 2 x BDP: beta-D-glucopyranuronic acid(Non-covalent)
BDP.3: 16 residues within 4Å:- Chain A: W.156, E.164, R.165, V.206, N.207, K.284, E.288, R.321, F.323, K.356, D.361, E.389, Y.390, H.524
- Ligands: XYP-XYP.1, XYP-XYP.1
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:E.164, A:R.165, A:R.165, A:N.207, A:Y.390, A:Y.390, A:Y.390
- Water bridges: A:K.284
- Salt bridges: A:K.284, A:R.321, A:K.356, A:K.356
BDP.13: 16 residues within 4Å:- Chain B: W.156, E.164, R.165, V.206, N.207, K.284, E.288, R.321, F.323, K.356, D.361, E.389, Y.390, H.524
- Ligands: XYP-XYP.2, XYP-XYP.2
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:E.164, B:E.164, B:R.165, B:R.165, B:N.207, B:Y.390, B:Y.390
- Water bridges: B:K.284
- Salt bridges: B:K.284, B:R.321, B:K.356, B:K.356
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 9 residues within 4Å:- Chain A: Y.97, Y.122, H.126, R.129, S.195, L.196, G.197, W.467
- Ligands: EDO.6
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.97, A:R.129, A:R.129, A:S.195
EDO.5: 5 residues within 4Å:- Chain A: R.47, P.184, T.187, D.188, R.191
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.47, A:R.47, A:R.191
EDO.6: 7 residues within 4Å:- Chain A: H.126, R.129, S.144, R.464, W.467, I.471
- Ligands: EDO.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.126, A:R.129, A:R.464, A:R.464, A:W.467
EDO.7: 7 residues within 4Å:- Chain A: Y.4, D.5, L.8, D.188, R.191, I.192, W.449
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.191, A:W.449
- Water bridges: A:D.5, A:D.5, A:D.5, A:R.191
EDO.8: 4 residues within 4Å:- Chain A: Q.623, D.627, K.642, Q.646
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.627, A:Q.646
- Water bridges: A:D.627, A:K.642
EDO.14: 9 residues within 4Å:- Chain B: Y.97, Y.122, H.126, R.129, S.195, L.196, G.197, W.467
- Ligands: EDO.19
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Y.97, B:Y.97, B:R.129, B:R.129, B:S.195
EDO.15: 5 residues within 4Å:- Chain B: R.47, P.184, T.187, D.188, R.191
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.47, B:R.47, B:R.191
- Water bridges: B:T.187
EDO.16: 4 residues within 4Å:- Chain B: N.555, T.557, H.590, H.591
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:H.590, B:H.591
- Water bridges: B:N.555, B:H.591
EDO.17: 7 residues within 4Å:- Chain B: Y.4, D.5, L.8, D.188, R.191, I.192, W.449
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.191, B:W.449
- Water bridges: B:D.5, B:R.191
EDO.18: 2 residues within 4Å:- Chain B: G.416, E.417
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.417
EDO.19: 8 residues within 4Å:- Chain B: Y.97, H.126, R.129, S.144, R.464, W.467, I.471
- Ligands: EDO.14
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:H.126, B:R.129, B:R.464, B:R.464, B:W.467
- 8 x CO: COBALT (II) ION(Non-covalent)
CO.9: 4 residues within 4Å:- Chain A: M.498, A.621, M.622, T.625
No protein-ligand interaction detected (PLIP)CO.10: 5 residues within 4Å:- Chain A: G.3, N.448, P.453, Q.456, R.637
No protein-ligand interaction detected (PLIP)CO.11: 3 residues within 4Å:- Chain A: N.603, W.605, R.669
No protein-ligand interaction detected (PLIP)CO.12: 4 residues within 4Å:- Chain A: N.158, N.160, V.162, W.698
No protein-ligand interaction detected (PLIP)CO.20: 4 residues within 4Å:- Chain B: M.498, A.621, M.622, T.625
No protein-ligand interaction detected (PLIP)CO.21: 5 residues within 4Å:- Chain B: G.3, N.448, P.453, Q.456, R.637
No protein-ligand interaction detected (PLIP)CO.22: 4 residues within 4Å:- Chain B: N.158, N.160, V.162, W.698
No protein-ligand interaction detected (PLIP)CO.23: 3 residues within 4Å:- Chain B: N.603, W.605, R.669
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nurizzo, D. et al., The Structural Basis for Catalysis and Specificity of the Pseudomonas Cellulosa Alpha-Glucuronidase, Glca67A. Structure (2002)
- Release Date
- 2002-09-26
- Peptides
- ALPHA-D-GLUCURONIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x XYP- XYP: beta-D-xylopyranose-(1-1)-beta-D-xylopyranose(Non-covalent)
- 2 x BDP: beta-D-glucopyranuronic acid(Non-covalent)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x CO: COBALT (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nurizzo, D. et al., The Structural Basis for Catalysis and Specificity of the Pseudomonas Cellulosa Alpha-Glucuronidase, Glca67A. Structure (2002)
- Release Date
- 2002-09-26
- Peptides
- ALPHA-D-GLUCURONIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B