SMTL ID : 1gtm.1

STRUCTURE OF GLUTAMATE DEHYDROGENASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: D.244, S.245, K.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.245, A:K.246 Salt bridges: A:K.264 SO4.2: 4 residues within 4Å: Chain A: G.221, N.222, A.223, G.224 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.222, A:A.223, A:G.224, A:A.295 Water bridges: A:G.221 SO4.3: 3 residues within 4Å: Chain B: G.221, N.222, A.223 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.222, B:A.223 Water bridges: B:G.221, B:G.221, B:A.295, B:A.296 SO4.4: 4 residues within 4Å: Chain B: D.244, S.245, K.246, K.264 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.245 Salt bridges: B:K.246, B:K.264 SO4.5: 3 residues within 4Å: Chain C: G.221, N.222, A.223 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.222, C:A.223 Water bridges: C:G.221, C:G.221 SO4.6: 4 residues within 4Å: Chain C: D.244, S.245, K.246, K.264 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.244, C:S.245 Salt bridges: C:K.246, C:K.264 SO4.7: 3 residues within 4Å: Chain D: D.244, S.245, K.264 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.245, D:K.246 Salt bridges: D:K.264 SO4.8: 4 residues within 4Å: Chain D: G.221, N.222, A.223, G.224 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:N.222, D:A.223, D:G.224, D:A.295 Water bridges: D:G.221 SO4.9: 3 residues within 4Å: Chain E: G.221, N.222, A.223 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:N.222, E:A.223 Water bridges: E:G.221, E:G.221, E:A.295, E:A.296 SO4.10: 4 residues within 4Å: Chain E: D.244, S.245, K.246, K.264 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:S.245 Salt bridges: E:K.246, E:K.264 SO4.11: 3 residues within 4Å: Chain F: G.221, N.222, A.223 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:N.222, F:A.223 Water bridges: F:G.221, F:G.221 SO4.12: 4 residues within 4Å: Chain F: D.244, S.245, K.246, K.264 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:D.244, F:S.245 Salt bridges: F:K.246, F:K.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yip, K.S. et al., The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures. Structure (1995)

Release Date

1997-01-11

Peptides

GLUTAMATE DEHYDROGENASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

GLUTAMATE DEHYDROGENASE