- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)
TMP.2: 12 residues within 4Å:- Chain A: D.9, F.36, P.37, Y.39, F.70, R.74, R.95, S.99, N.100, Y.103, Y.165
- Ligands: MG.1
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:F.36, A:P.37, A:Y.103
- Hydrogen bonds: A:R.74, A:R.74, A:N.100, A:E.166
- Water bridges: A:K.13, A:F.36, A:D.94, A:R.95, A:R.95
- Salt bridges: A:R.95
- pi-Stacking: A:F.70
TMP.10: 12 residues within 4Å:- Chain B: D.9, F.36, P.37, Y.39, F.70, R.74, R.95, S.99, N.100, Y.103, Y.165
- Ligands: MG.9
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:F.36, B:P.37, B:Y.103
- Hydrogen bonds: B:Y.39, B:R.74, B:R.74, B:N.100
- Water bridges: B:K.13, B:F.36, B:D.94, B:R.95, B:R.95
- Salt bridges: B:R.95
- pi-Stacking: B:F.70
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 7 residues within 4Å:- Chain A: V.8, G.10, A.11, G.12, K.13, R.14, R.153
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:G.10, A:A.11, A:G.12, A:K.13, A:R.14
- Water bridges: A:G.12, A:K.13, A:K.13, A:K.13, A:T.15, A:R.153, A:R.153, A:R.153
- Salt bridges: A:K.13, A:R.153
SO4.4: 5 residues within 4Å:- Chain A: A.154, Q.155, A.161, R.162, R.167
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.162
- Salt bridges: A:R.162, A:R.167
SO4.6: 6 residues within 4Å:- Chain A: W.119, R.122, I.123, R.127
- Chain B: E.55, H.56
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Salt bridges: B:H.56, A:R.122
- Hydrogen bonds: A:R.127
SO4.11: 7 residues within 4Å:- Chain B: V.8, G.10, A.11, G.12, K.13, R.14, R.153
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:G.10, B:A.11, B:G.12, B:K.13, B:R.14
- Water bridges: B:G.12, B:K.13, B:K.13, B:K.13, B:T.15, B:R.153, B:R.153, B:R.153
- Salt bridges: B:K.13, B:R.153
SO4.12: 5 residues within 4Å:- Chain B: A.154, Q.155, A.161, R.162, R.167
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.162
- Salt bridges: B:R.162, B:R.167
SO4.14: 6 residues within 4Å:- Chain A: E.55, H.56
- Chain B: W.119, R.122, I.123, R.127
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Salt bridges: A:H.56, B:R.122
- Hydrogen bonds: B:R.127
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 3 residues within 4Å:- Chain A: Y.39, A.49, H.53
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:A.49
ACT.7: 3 residues within 4Å:- Chain A: V.43, D.46
- Chain B: R.127
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:V.43
- Hydrogen bonds: A:D.46
- Salt bridges: B:R.127
ACT.8: 4 residues within 4Å:- Chain A: R.25, S.30, V.31, Y.88
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.31
- Salt bridges: A:R.25
ACT.13: 3 residues within 4Å:- Chain B: Y.39, A.49, H.53
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:A.49
ACT.15: 3 residues within 4Å:- Chain A: R.127
- Chain B: V.43, D.46
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Salt bridges: A:R.127
- Hydrophobic interactions: B:V.43
- Hydrogen bonds: B:D.46, B:D.46
ACT.16: 4 residues within 4Å:- Chain B: R.25, S.30, V.31, Y.88
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.31
- Salt bridges: B:R.25
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ursby, T. et al., Cryophotolysis of Caged Compounds: A Technique for Trapping Intermediate States in Protein Crystals. Acta Crystallogr.,Sect.D (2002)
- Release Date
- 2002-03-28
- Peptides
- THYMIDYLATE KINASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ursby, T. et al., Cryophotolysis of Caged Compounds: A Technique for Trapping Intermediate States in Protein Crystals. Acta Crystallogr.,Sect.D (2002)
- Release Date
- 2002-03-28
- Peptides
- THYMIDYLATE KINASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B