SMTL ID : 1gv0.1

Structural Basis for Thermophilic Protein Stability: Structures of Thermophilic and Mesophilic Malate Dehydrogenases

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 25 residues within 4Å: Chain A: I.6, G.9, N.10, V.11, D.32, V.33, V.34, T.76, A.77, G.78, L.79, P.80, N.94, I.97, E.100, V.101, V.117, S.118, N.119, L.121, M.142, L.146, H.174, A.224, P.228 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:P.228, A:P.228 Hydrogen bonds: A:N.10, A:N.10, A:V.11, A:G.12, A:V.33, A:G.78, A:G.78, A:L.79, A:N.94, A:E.100, A:E.100, A:V.117, A:N.119, A:N.119 Water bridges: A:G.9 NAD.2: 20 residues within 4Å: Chain B: G.7, G.9, N.10, V.11, D.32, V.33, T.76, A.77, G.78, L.79, I.97, V.101, V.117, N.119, M.142, L.146, H.174, S.223, A.224, P.228 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.146, B:P.228, B:P.228 Hydrogen bonds: B:G.9, B:N.10, B:V.11, B:V.33, B:N.119, B:M.142, B:S.223 Water bridges: B:G.9, B:G.12 NAD.3: 25 residues within 4Å: Chain C: I.6, G.9, N.10, V.11, D.32, V.33, V.34, T.76, A.77, G.78, L.79, P.80, N.94, I.97, E.100, V.101, V.117, S.118, N.119, L.121, M.142, L.146, H.174, A.224, P.228 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:P.228, C:P.228 Hydrogen bonds: C:N.10, C:N.10, C:V.11, C:G.12, C:V.33, C:G.78, C:G.78, C:L.79, C:N.94, C:E.100, C:V.117, C:N.119, C:N.119 Water bridges: C:G.9, C:Y.64 NAD.4: 20 residues within 4Å: Chain D: G.7, G.9, N.10, V.11, D.32, V.33, T.76, A.77, G.78, L.79, I.97, V.101, V.117, N.119, M.142, L.146, H.174, S.223, A.224, P.228 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:L.146, D:P.228, D:P.228 Hydrogen bonds: D:G.9, D:N.10, D:V.11, D:V.33, D:N.119, D:M.142, D:S.223 Water bridges: D:G.9, D:G.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalhus, B. et al., Structural Basis for Thermophilic Protein Stability: Structures of Thermophilic and Mesophilic Malate Dehydrogenases. J.Mol.Biol. (2002)

Release Date

2002-02-15

Peptides

MALATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

MALATE DEHYDROGENASE