- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.2: 22 residues within 4Å:- Chain A: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain A,- Hydrophobic interactions: A:L.39, A:I.42, A:F.43, A:F.43, A:F.43, A:Q.53, A:L.57, A:I.61, A:I.81, A:I.81, A:K.84, A:F.88, A:I.90, A:Q.94, A:Y.95, A:Y.95, A:V.98, A:Y.124, A:L.127, A:F.131, A:F.131
- Hydrogen bonds: A:N.44, A:Q.53, A:H.393
- Water bridges: A:N.44, A:K.84, A:K.84
- Salt bridges: A:K.84
- Metal complexes: A:H.85
HEM.7: 22 residues within 4Å:- Chain B: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain B,- Hydrophobic interactions: B:L.39, B:I.42, B:F.43, B:F.43, B:F.43, B:Q.53, B:L.57, B:I.61, B:I.81, B:I.81, B:K.84, B:F.88, B:I.90, B:Q.94, B:Y.95, B:Y.95, B:V.98, B:Y.124, B:L.127, B:F.131, B:F.131
- Hydrogen bonds: B:N.44, B:Q.53, B:H.393
- Water bridges: B:N.44, B:K.84, B:K.84
- Salt bridges: B:K.84
- Metal complexes: B:H.85
HEM.12: 22 residues within 4Å:- Chain C: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain C,- Hydrophobic interactions: C:L.39, C:I.42, C:F.43, C:F.43, C:F.43, C:Q.53, C:L.57, C:I.61, C:I.81, C:I.81, C:K.84, C:F.88, C:I.90, C:Q.94, C:Y.95, C:Y.95, C:V.98, C:Y.124, C:L.127, C:F.131, C:F.131
- Hydrogen bonds: C:N.44, C:Q.53, C:H.393
- Water bridges: C:N.44, C:K.84, C:K.84
- Salt bridges: C:K.84
- Metal complexes: C:H.85
HEM.17: 22 residues within 4Å:- Chain D: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain D,- Hydrophobic interactions: D:L.39, D:I.42, D:F.43, D:F.43, D:F.43, D:Q.53, D:L.57, D:I.61, D:I.81, D:I.81, D:K.84, D:F.88, D:I.90, D:Q.94, D:Y.95, D:Y.95, D:V.98, D:Y.124, D:L.127, D:F.131, D:F.131
- Hydrogen bonds: D:N.44, D:Q.53, D:H.393
- Water bridges: D:N.44, D:K.84, D:K.84
- Salt bridges: D:K.84
- Metal complexes: D:H.85
HEM.22: 22 residues within 4Å:- Chain E: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain E,- Hydrophobic interactions: E:L.39, E:I.42, E:F.43, E:F.43, E:F.43, E:Q.53, E:L.57, E:I.61, E:I.81, E:I.81, E:K.84, E:F.88, E:I.90, E:Q.94, E:Y.95, E:Y.95, E:V.98, E:Y.124, E:L.127, E:F.131, E:F.131
- Hydrogen bonds: E:N.44, E:Q.53, E:H.393
- Water bridges: E:N.44, E:K.84, E:K.84
- Salt bridges: E:K.84
- Metal complexes: E:H.85
HEM.27: 22 residues within 4Å:- Chain F: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain F,- Hydrophobic interactions: F:L.39, F:I.42, F:F.43, F:F.43, F:F.43, F:Q.53, F:L.57, F:I.61, F:I.81, F:I.81, F:K.84, F:F.88, F:I.90, F:Q.94, F:Y.95, F:Y.95, F:V.98, F:Y.124, F:L.127, F:F.131, F:F.131
- Hydrogen bonds: F:N.44, F:Q.53, F:H.393
- Water bridges: F:N.44, F:K.84, F:K.84
- Salt bridges: F:K.84
- Metal complexes: F:H.85
HEM.32: 22 residues within 4Å:- Chain G: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain G,- Hydrophobic interactions: G:L.39, G:I.42, G:F.43, G:F.43, G:F.43, G:Q.53, G:L.57, G:I.61, G:I.81, G:I.81, G:K.84, G:F.88, G:I.90, G:Q.94, G:Y.95, G:Y.95, G:V.98, G:Y.124, G:L.127, G:F.131, G:F.131
- Hydrogen bonds: G:N.44, G:Q.53, G:H.393
- Water bridges: G:N.44, G:K.84, G:K.84
- Salt bridges: G:K.84
- Metal complexes: G:H.85
HEM.37: 22 residues within 4Å:- Chain H: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain H,- Hydrophobic interactions: H:L.39, H:I.42, H:F.43, H:F.43, H:F.43, H:Q.53, H:L.57, H:I.61, H:I.81, H:I.81, H:K.84, H:F.88, H:I.90, H:Q.94, H:Y.95, H:Y.95, H:V.98, H:Y.124, H:L.127, H:F.131, H:F.131
- Hydrogen bonds: H:N.44, H:Q.53, H:H.393
- Water bridges: H:N.44, H:K.84, H:K.84
- Salt bridges: H:K.84
- Metal complexes: H:H.85
HEM.42: 22 residues within 4Å:- Chain I: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain I,- Hydrophobic interactions: I:L.39, I:I.42, I:F.43, I:F.43, I:F.43, I:Q.53, I:L.57, I:I.61, I:I.81, I:I.81, I:K.84, I:F.88, I:I.90, I:Q.94, I:Y.95, I:Y.95, I:V.98, I:Y.124, I:L.127, I:F.131, I:F.131
- Hydrogen bonds: I:N.44, I:Q.53, I:H.393
- Water bridges: I:N.44, I:K.84, I:K.84
- Salt bridges: I:K.84
- Metal complexes: I:H.85
HEM.47: 22 residues within 4Å:- Chain J: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain J,- Hydrophobic interactions: J:L.39, J:I.42, J:F.43, J:F.43, J:F.43, J:Q.53, J:L.57, J:I.61, J:I.81, J:I.81, J:K.84, J:F.88, J:I.90, J:Q.94, J:Y.95, J:Y.95, J:V.98, J:Y.124, J:L.127, J:F.131, J:F.131
- Hydrogen bonds: J:N.44, J:Q.53, J:H.393
- Water bridges: J:N.44, J:K.84, J:K.84
- Salt bridges: J:K.84
- Metal complexes: J:H.85
HEM.52: 22 residues within 4Å:- Chain K: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain K,- Hydrophobic interactions: K:L.39, K:I.42, K:F.43, K:F.43, K:F.43, K:Q.53, K:L.57, K:I.61, K:I.81, K:I.81, K:K.84, K:F.88, K:I.90, K:Q.94, K:Y.95, K:Y.95, K:V.98, K:Y.124, K:L.127, K:F.131, K:F.131
- Hydrogen bonds: K:N.44, K:Q.53, K:H.393
- Water bridges: K:N.44, K:K.84, K:K.84
- Salt bridges: K:K.84
- Metal complexes: K:H.85
HEM.57: 22 residues within 4Å:- Chain L: L.39, I.42, F.43, N.44, Q.53, A.56, L.57, A.60, I.61, I.81, K.84, H.85, F.88, I.90, Q.94, Y.95, V.98, Y.124, L.127, F.131, P.392, H.393
29 PLIP interactions:29 interactions with chain L,- Hydrophobic interactions: L:L.39, L:I.42, L:F.43, L:F.43, L:F.43, L:Q.53, L:L.57, L:I.61, L:I.81, L:I.81, L:K.84, L:F.88, L:I.90, L:Q.94, L:Y.95, L:Y.95, L:V.98, L:Y.124, L:L.127, L:F.131, L:F.131
- Hydrogen bonds: L:N.44, L:Q.53, L:H.393
- Water bridges: L:N.44, L:K.84, L:K.84
- Salt bridges: L:K.84
- Metal complexes: L:H.85
- 24 x NA: SODIUM ION(Non-functional Binders)
NA.3: 7 residues within 4Å:- Chain A: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.4: 6 residues within 4Å:- Chain A: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.8: 7 residues within 4Å:- Chain B: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.9: 6 residues within 4Å:- Chain B: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.13: 7 residues within 4Å:- Chain C: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.14: 6 residues within 4Å:- Chain C: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.18: 7 residues within 4Å:- Chain D: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.19: 6 residues within 4Å:- Chain D: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.23: 7 residues within 4Å:- Chain E: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.24: 6 residues within 4Å:- Chain E: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.28: 7 residues within 4Å:- Chain F: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.29: 6 residues within 4Å:- Chain F: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.33: 7 residues within 4Å:- Chain G: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.34: 6 residues within 4Å:- Chain G: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.38: 7 residues within 4Å:- Chain H: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.39: 6 residues within 4Å:- Chain H: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.43: 7 residues within 4Å:- Chain I: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.44: 6 residues within 4Å:- Chain I: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.48: 7 residues within 4Å:- Chain J: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.49: 6 residues within 4Å:- Chain J: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.53: 7 residues within 4Å:- Chain K: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.54: 6 residues within 4Å:- Chain K: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIPNA.58: 7 residues within 4Å:- Chain L: K.40, E.41, F.43, M.45, H.200, Q.201, E.202
Ligand excluded by PLIPNA.59: 6 residues within 4Å:- Chain L: G.268, Q.271, H.294, V.301, H.302, A.303
Ligand excluded by PLIP- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 3 residues within 4Å:- Chain A: G.51, Q.53, R.54
Ligand excluded by PLIPCL.10: 3 residues within 4Å:- Chain B: G.51, Q.53, R.54
Ligand excluded by PLIPCL.15: 3 residues within 4Å:- Chain C: G.51, Q.53, R.54
Ligand excluded by PLIPCL.20: 3 residues within 4Å:- Chain D: G.51, Q.53, R.54
Ligand excluded by PLIPCL.25: 3 residues within 4Å:- Chain E: G.51, Q.53, R.54
Ligand excluded by PLIPCL.30: 3 residues within 4Å:- Chain F: G.51, Q.53, R.54
Ligand excluded by PLIPCL.35: 3 residues within 4Å:- Chain G: G.51, Q.53, R.54
Ligand excluded by PLIPCL.40: 3 residues within 4Å:- Chain H: G.51, Q.53, R.54
Ligand excluded by PLIPCL.45: 3 residues within 4Å:- Chain I: G.51, Q.53, R.54
Ligand excluded by PLIPCL.50: 3 residues within 4Å:- Chain J: G.51, Q.53, R.54
Ligand excluded by PLIPCL.55: 3 residues within 4Å:- Chain K: G.51, Q.53, R.54
Ligand excluded by PLIPCL.60: 3 residues within 4Å:- Chain L: G.51, Q.53, R.54
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ilari, A. et al., The X-Ray Structure of Ferric Escherichia Coli Flavohemoglobin Reveals an Unexpected Geometry of the Distal Heme Pocket. J.Biol.Chem. (2002)
- Release Date
- 2002-08-06
- Peptides
- FLAVOHEMOPROTEIN: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 24 x NA: SODIUM ION(Non-functional Binders)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ilari, A. et al., The X-Ray Structure of Ferric Escherichia Coli Flavohemoglobin Reveals an Unexpected Geometry of the Distal Heme Pocket. J.Biol.Chem. (2002)
- Release Date
- 2002-08-06
- Peptides
- FLAVOHEMOPROTEIN: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
A