SMTL ID : 1gvm.1 (2 other biounits)

CHOLINE BINDING DOMAIN OF THE MAJOR AUTOLYSIN (C-LYTA) FROM STREPTOCOCCUS PNEUMONIAE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

8 x CHT: CHOLINE ION(Non-covalent)

CHT.1: 5 residues within 4Å: Chain A: F.17, W.24, Y.47, M.55, E.72 3 PLIP interactions: 3 interactions with chain A pi-Cation interactions: A:F.17, A:W.24, A:W.24 CHT.2: 4 residues within 4Å: Chain A: W.38, W.46, M.75, E.93 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.38, A:W.38, A:W.46, A:W.46 CHT.3: 4 residues within 4Å: Chain A: W.59, W.66, Y.82, Y.87 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.59, A:W.59, A:W.66, A:Y.82 CHT.4: 4 residues within 4Å: Chain A: W.79, W.86, Y.111 Chain B: D.130 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B pi-Cation interactions: A:W.79, A:W.79, A:W.86, A:W.86, A:Y.111 Hydrogen bonds: B:D.130, B:D.130 CHT.5: 4 residues within 4Å: Chain B: F.17, W.24, Y.47, E.72 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.72 pi-Cation interactions: B:F.17, B:W.24 CHT.6: 4 residues within 4Å: Chain B: W.46, Y.67, M.75, E.93 5 PLIP interactions: 5 interactions with chain B Salt bridges: B:E.93 pi-Cation interactions: B:W.38, B:W.38, B:W.46, B:W.46 CHT.7: 6 residues within 4Å: Chain B: W.59, W.66, Y.82, Y.87, M.96, D.116 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.116 pi-Cation interactions: B:W.59, B:W.66, B:Y.87 CHT.8: 4 residues within 4Å: Chain A: D.130 Chain B: W.79, W.86, Y.111 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:D.130 pi-Cation interactions: B:W.79, B:W.79, B:W.86, B:W.86, B:Y.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez-Tornero, C. et al., Two New Crystal Forms of the Choline-Binding Domain of the Major Pneumococcal Autolysin: Insights Into the Dynamics of the Active Dimeric. J.Mol.Biol. (2002)

Release Date

2002-08-01

Peptides

AUTOLYSIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AUTOLYSIN

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