- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Covalent)
NDP.2: 13 residues within 4Å:- Chain A: Y.183, P.187, R.188, N.198, Y.200, S.289, Q.290, K.291, R.295, L.433, V.437, F.438
- Ligands: SO4.3
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:Q.290
- Hydrogen bonds: A:R.188, A:N.198, A:Y.200, A:Y.200, A:Q.290, A:K.291
- Water bridges: A:R.188, A:Q.290, A:Q.290, A:Q.290, A:R.295, A:R.295, A:R.295, A:R.295, A:E.442
- Salt bridges: A:R.188, A:R.295
- pi-Cation interactions: A:R.188, A:R.188
NDP.7: 13 residues within 4Å:- Chain B: Y.183, P.187, R.188, N.198, Y.200, S.289, Q.290, K.291, R.295, L.433, V.437, F.438
- Ligands: SO4.8
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:Q.290
- Hydrogen bonds: B:R.188, B:N.198, B:Y.200, B:Y.200, B:Q.290, B:K.291
- Water bridges: B:R.188, B:Q.290, B:Q.290, B:Q.290, B:R.295, B:R.295, B:R.295, B:R.295, B:E.442
- Salt bridges: B:R.188, B:R.295
- pi-Cation interactions: B:R.188, B:R.188
NDP.12: 13 residues within 4Å:- Chain C: Y.183, P.187, R.188, N.198, Y.200, S.289, Q.290, K.291, R.295, L.433, V.437, F.438
- Ligands: SO4.13
19 PLIP interactions:19 interactions with chain C- Hydrophobic interactions: C:Q.290
- Hydrogen bonds: C:R.188, C:N.198, C:Y.200, C:Q.290, C:K.291
- Water bridges: C:R.188, C:Q.290, C:Q.290, C:Q.290, C:R.295, C:R.295, C:R.295, C:R.295, C:E.442
- Salt bridges: C:R.188, C:R.295
- pi-Cation interactions: C:R.188, C:R.188
NDP.17: 13 residues within 4Å:- Chain D: Y.183, P.187, R.188, N.198, Y.200, S.289, Q.290, K.291, R.295, L.433, V.437, F.438
- Ligands: SO4.18
19 PLIP interactions:19 interactions with chain D- Hydrophobic interactions: D:Q.290
- Hydrogen bonds: D:R.188, D:N.198, D:Y.200, D:Q.290, D:K.291
- Water bridges: D:R.188, D:Q.290, D:Q.290, D:Q.290, D:R.295, D:R.295, D:R.295, D:R.295, D:E.442
- Salt bridges: D:R.188, D:R.295
- pi-Cation interactions: D:R.188, D:R.188
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: S.289, Q.290
- Ligands: NDP.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.289, A:Q.290, A:Q.290
SO4.8: 3 residues within 4Å:- Chain B: S.289, Q.290
- Ligands: NDP.7
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.290, B:Q.290
SO4.13: 3 residues within 4Å:- Chain C: S.289, Q.290
- Ligands: NDP.12
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:S.289, C:Q.290, C:Q.290
SO4.18: 3 residues within 4Å:- Chain D: S.289, Q.290
- Ligands: NDP.17
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.290, D:Q.290
- 8 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 8 residues within 4Å:- Chain A: P.60, H.61, V.101, N.133, F.138, F.146, I.150
- Ligands: HEM.1
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:V.101, A:F.138, A:F.146, A:I.150
- Hydrogen bonds: A:N.133
- Salt bridges: A:H.61
ACT.5: 7 residues within 4Å:- Chain A: V.101, D.113, V.114, F.139, F.149, Q.153, L.184
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:V.101, A:V.114, A:F.139, A:F.149
- Hydrogen bonds: A:D.113, A:V.114
ACT.9: 8 residues within 4Å:- Chain B: P.60, H.61, V.101, N.133, F.138, F.146, I.150
- Ligands: HEM.6
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:V.101, B:F.138, B:F.146, B:I.150
- Hydrogen bonds: B:N.133
- Salt bridges: B:H.61
ACT.10: 7 residues within 4Å:- Chain B: V.101, D.113, V.114, F.139, F.149, Q.153, L.184
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:V.101, B:V.114, B:F.139, B:F.149
- Hydrogen bonds: B:D.113, B:V.114
ACT.14: 8 residues within 4Å:- Chain C: P.60, H.61, V.101, N.133, F.138, F.146, I.150
- Ligands: HEM.11
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:V.101, C:F.138, C:F.146, C:I.150
- Hydrogen bonds: C:N.133
- Salt bridges: C:H.61
ACT.15: 7 residues within 4Å:- Chain C: V.101, D.113, V.114, F.139, F.149, Q.153, L.184
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:V.101, C:V.114, C:F.139, C:F.149
- Hydrogen bonds: C:V.114
ACT.19: 8 residues within 4Å:- Chain D: P.60, H.61, V.101, N.133, F.138, F.146, I.150
- Ligands: HEM.16
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:V.101, D:F.138, D:F.146, D:I.150
- Hydrogen bonds: D:N.133
- Salt bridges: D:H.61
ACT.20: 7 residues within 4Å:- Chain D: V.101, D.113, V.114, F.139, F.149, Q.153, L.184
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:V.101, D:V.114, D:F.139, D:F.149
- Hydrogen bonds: D:V.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Murshudov, G.N. et al., The Structures of Micrococcus Lysodeikticus Catalase, its Ferryl Intermediate (Compound II) and Nadph Complex. Acta Crystallogr.,Sect.D (2002)
- Release Date
- 2002-03-19
- Peptides
- Catalase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 8 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Murshudov, G.N. et al., The Structures of Micrococcus Lysodeikticus Catalase, its Ferryl Intermediate (Compound II) and Nadph Complex. Acta Crystallogr.,Sect.D (2002)
- Release Date
- 2002-03-19
- Peptides
- Catalase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A