SMTL ID : 1gwm.1

Carbohydrate binding module family29 complexed with glucohexaose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x GLC- BGC- BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-BGC-BGC-BGC-BGC-BGC.1: 11 residues within 4Å: Chain A: W.24, G.25, W.26, Y.46, K.74, E.78, K.85, R.112, Q.116, A.118, P.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.118 Water bridges: A:Y.46

1 x CO: COBALT (II) ION(Non-covalent)

CO.2: 2 residues within 4Å: Chain A: H.150, H.152 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.150, A:H.152

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: F.11, N.13, A.14, G.16, L.17, P.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.16 Water bridges: A:S.15, A:N.19 EDO.4: 3 residues within 4Å: Chain A: T.90, I.91, S.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.92 Water bridges: A:Y.100 EDO.5: 2 residues within 4Å: Chain A: Y.7 Ligands: EDO.10 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.7, A:Y.7, A:V.9 EDO.6: 3 residues within 4Å: Chain A: S.94, V.98, Y.100 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.94, A:Y.100 Water bridges: A:E.96 EDO.7: 5 residues within 4Å: Chain A: G.61, D.103, V.104, D.105, S.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.104 Water bridges: A:G.61, A:G.61 EDO.8: 6 residues within 4Å: Chain A: N.23, G.25, W.26, G.27, C.28, L.30 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.23, A:G.27, A:C.28 Water bridges: A:G.25 EDO.9: 4 residues within 4Å: Chain A: T.8, V.9, Y.21, R.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.9, A:Y.21, A:Y.21 Water bridges: A:V.9 EDO.10: 5 residues within 4Å: Chain A: Y.7, V.141, D.142, P.143 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.141 Water bridges: A:I.144, A:I.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Charnock, S.J. et al., Promiscuity in Ligand-Binding: The Three-Dimensional Structure of a Piromyces Carbohydrate-Binding Module,Cbm29-2,in Complex with Cello- and Mannohexaose. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2003-03-20

Peptides

NON-CATALYTIC PROTEIN 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NON-CATALYTIC PROTEIN 1

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