- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 3 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
CDP.2: 18 residues within 4Å:- Chain A: A.101, P.104, K.105, M.106, L.107, A.132, T.133, T.134, E.136
- Chain C: D.9, H.11, H.43, D.57, I.58, G.59, K.60
- Ligands: MN.3, ZN.10
14 PLIP interactions:5 interactions with chain C, 9 interactions with chain A- Hydrogen bonds: C:D.57, C:G.59, C:K.60, A:A.101, A:L.107, A:T.134
- Salt bridges: C:H.11, C:H.43
- Hydrophobic interactions: A:A.132, A:T.134
- Water bridges: A:K.105, A:K.105, A:T.134, A:T.134
CDP.4: 18 residues within 4Å:- Chain A: D.9, H.11, H.43, D.57, G.59, K.60, D.64
- Chain B: A.101, P.104, K.105, M.106, L.107, A.132, T.133, T.134, E.136
- Ligands: ZN.1, MN.5
11 PLIP interactions:5 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:D.57, A:G.59, B:A.101, B:L.107, B:T.133, B:T.134
- Water bridges: A:D.64
- Salt bridges: A:H.11, A:H.43
- Hydrophobic interactions: B:A.132, B:T.134
CDP.7: 17 residues within 4Å:- Chain B: D.9, H.11, H.43, D.57, I.58, G.59
- Chain C: A.101, P.104, K.105, M.106, L.107, A.132, T.133, T.134, E.136
- Ligands: ZN.6, MN.8
11 PLIP interactions:7 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:A.132, C:T.134
- Hydrogen bonds: C:A.101, C:L.107, C:T.133, C:T.134, B:D.57, B:G.59
- Water bridges: C:K.105
- Salt bridges: B:H.11, B:H.43
- 3 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 3 residues within 4Å:- Chain A: E.136
- Chain C: H.35
- Ligands: CDP.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.136, H2O.4, H2O.4, H2O.4
MN.5: 2 residues within 4Å:- Chain B: E.136
- Ligands: CDP.4
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.136, H2O.8, H2O.8, H2O.8
MN.8: 2 residues within 4Å:- Chain C: E.136
- Ligands: CDP.7
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.136, H2O.8, H2O.8
- 1 x SO4: SULFATE ION(Non-functional Binders)
SO4.9: 8 residues within 4Å:- Chain A: G.139, R.143
- Chain B: G.139, F.140, R.143
- Chain C: G.139, F.140, R.143
9 PLIP interactions:2 interactions with chain A, 3 interactions with chain B, 4 interactions with chain C- Hydrogen bonds: A:F.140, B:F.140, C:G.139, C:F.140
- Salt bridges: A:R.143, B:R.143, C:R.143
- Water bridges: B:R.143, C:R.143
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kemp, L.E. et al., Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase: An Essential Enzyme for Isoprenoid Biosynthesis and Target for Antimicrobial Drug Development. Proc.Natl.Acad.Sci.USA (2002)
- Release Date
- 2002-04-03
- Peptides
- 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 3 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kemp, L.E. et al., Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase: An Essential Enzyme for Isoprenoid Biosynthesis and Target for Antimicrobial Drug Development. Proc.Natl.Acad.Sci.USA (2002)
- Release Date
- 2002-04-03
- Peptides
- 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C