SMTL ID : 1gxt.1

Hydrogenase Maturation Protein HypF "acylphosphatase-like" N-terminal domain (HypF-ACP) in complex with Sulfate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

homo-hexamer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: V.17, Q.18, R.23, N.41, V.46 Ligands: SO4.2 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain B: V.17, Q.18, R.23, N.41, V.46 Ligands: SO4.5 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain C: V.17, Q.18, R.23, N.41, V.46 Ligands: SO4.8 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain D: V.17, Q.18, R.23, N.41, V.46 Ligands: SO4.11 Ligand excluded by PLIP CL.13: 6 residues within 4Å: Chain E: V.17, Q.18, R.23, N.41, V.46 Ligands: SO4.14 Ligand excluded by PLIP CL.16: 6 residues within 4Å: Chain F: V.17, Q.18, R.23, N.41, V.46 Ligands: SO4.17 Ligand excluded by PLIP

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 9 residues within 4Å: Chain A: V.17, Q.18, G.19, V.20, G.21, F.22, R.23, P.24 Ligands: CL.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.19, A:V.20, A:G.21, A:F.22, A:R.23 Water bridges: A:R.23, A:R.23, A:R.23, A:R.23 Salt bridges: A:R.23 SO4.5: 9 residues within 4Å: Chain B: V.17, Q.18, G.19, V.20, G.21, F.22, R.23, P.24 Ligands: CL.4 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.19, B:V.20, B:G.21, B:F.22, B:R.23 Water bridges: B:R.23, B:R.23, B:R.23, B:R.23 Salt bridges: B:R.23 SO4.8: 9 residues within 4Å: Chain C: V.17, Q.18, G.19, V.20, G.21, F.22, R.23, P.24 Ligands: CL.7 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:G.19, C:V.20, C:G.21, C:F.22, C:R.23 Water bridges: C:R.23, C:R.23, C:R.23, C:R.23 Salt bridges: C:R.23 SO4.11: 9 residues within 4Å: Chain D: V.17, Q.18, G.19, V.20, G.21, F.22, R.23, P.24 Ligands: CL.10 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:G.19, D:V.20, D:G.21, D:F.22, D:R.23 Water bridges: D:R.23, D:R.23, D:R.23, D:R.23 Salt bridges: D:R.23 SO4.14: 9 residues within 4Å: Chain E: V.17, Q.18, G.19, V.20, G.21, F.22, R.23, P.24 Ligands: CL.13 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:G.19, E:V.20, E:G.21, E:F.22, E:R.23 Water bridges: E:R.23, E:R.23, E:R.23, E:R.23 Salt bridges: E:R.23 SO4.17: 9 residues within 4Å: Chain F: V.17, Q.18, G.19, V.20, G.21, F.22, R.23, P.24 Ligands: CL.16 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:G.19, F:V.20, F:G.21, F:F.22, F:R.23 Water bridges: F:R.23, F:R.23, F:R.23, F:R.23 Salt bridges: F:R.23

6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 6 residues within 4Å: Chain A: R.49, F.79, I.80, W.81, S.82, Q.83 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.49, A:R.49, A:I.80, A:S.82, A:S.82 Water bridges: A:R.91 TRS.6: 6 residues within 4Å: Chain B: R.49, F.79, I.80, W.81, S.82, Q.83 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.49, B:R.49, B:I.80, B:S.82, B:S.82 Water bridges: B:R.91 TRS.9: 6 residues within 4Å: Chain C: R.49, F.79, I.80, W.81, S.82, Q.83 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.49, C:R.49, C:I.80, C:S.82, C:S.82 Water bridges: C:R.91 TRS.12: 6 residues within 4Å: Chain D: R.49, F.79, I.80, W.81, S.82, Q.83 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.49, D:R.49, D:I.80, D:S.82, D:S.82 Water bridges: D:R.91 TRS.15: 6 residues within 4Å: Chain E: R.49, F.79, I.80, W.81, S.82, Q.83 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:R.49, E:R.49, E:I.80, E:S.82, E:S.82 Water bridges: E:R.91 TRS.18: 6 residues within 4Å: Chain F: R.49, F.79, I.80, W.81, S.82, Q.83 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:R.49, F:R.49, F:I.80, F:S.82, F:S.82 Water bridges: F:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosano, C. et al., Crystal Structure and Anion Binding in the Prokaryotic Hydrogenase Maturation Factor Hypf Acylphosphatase-Like Domain. J.Mol.Biol. (2002)

Release Date

2002-09-12

Peptides

HYDROGENASE MATURATION PROTEIN HYPF: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

HYDROGENASE MATURATION PROTEIN HYPF