SMTL ID : 1gy9.1 (1 other biounit)

Taurine/alpha-ketoglutarate Dioxygenase from Escherichia coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.99, D.101, H.255, R.270 Ligands: AKG.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.99, A:D.101, A:H.255 FE.4: 5 residues within 4Å: Chain B: H.99, D.101, H.255, R.270 Ligands: AKG.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.99, B:D.101, B:H.255 FE.7: 5 residues within 4Å: Chain C: H.99, D.101, H.255, R.270 Ligands: AKG.9 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.99, C:D.101, C:H.255 FE.10: 5 residues within 4Å: Chain D: H.99, D.101, H.255, R.270 Ligands: AKG.12 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.99, D:D.101, D:H.255

4 x TAU: 2-AMINOETHANESULFONIC ACID(Non-covalent)

TAU.2: 11 residues within 4Å: Chain A: H.70, Y.73, D.94, N.95, H.99, D.101, V.102, F.104, F.159, F.206, R.270 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.73, A:Y.73, A:V.102 Salt bridges: A:H.70, A:R.270 TAU.5: 11 residues within 4Å: Chain B: H.70, Y.73, D.94, N.95, H.99, D.101, V.102, F.104, F.159, F.206, R.270 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.73, B:Y.73, B:V.102 Salt bridges: B:H.70, B:R.270 TAU.8: 11 residues within 4Å: Chain C: H.70, Y.73, D.94, N.95, H.99, D.101, V.102, F.104, F.159, F.206, R.270 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.73, C:V.102 Salt bridges: C:H.70, C:R.270 TAU.11: 11 residues within 4Å: Chain D: H.70, Y.73, D.94, N.95, H.99, D.101, V.102, F.104, F.159, F.206, R.270 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Y.73, D:V.102 Salt bridges: D:H.70, D:R.270

4 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.3: 13 residues within 4Å: Chain A: L.85, N.95, H.99, D.101, L.114, T.126, W.240, H.255, A.257, R.266, M.268, R.270 Ligands: FE.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.85, A:N.95, A:L.114, A:A.257 Hydrogen bonds: A:T.126 Salt bridges: A:H.255, A:R.266, A:R.270 AKG.6: 13 residues within 4Å: Chain B: L.85, N.95, H.99, D.101, L.114, T.126, W.240, H.255, A.257, R.266, M.268, R.270 Ligands: FE.4 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.85, B:N.95, B:L.114, B:A.257 Hydrogen bonds: B:T.126 Salt bridges: B:H.255, B:R.266, B:R.270 AKG.9: 13 residues within 4Å: Chain C: L.85, N.95, H.99, D.101, L.114, T.126, W.240, H.255, A.257, R.266, M.268, R.270 Ligands: FE.7 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:L.85, C:N.95, C:L.114, C:A.257 Hydrogen bonds: C:T.126, C:T.126 Salt bridges: C:H.255, C:R.266, C:R.270 AKG.12: 13 residues within 4Å: Chain D: L.85, N.95, H.99, D.101, L.114, T.126, W.240, H.255, A.257, R.266, M.268, R.270 Ligands: FE.10 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:L.85, D:N.95, D:L.114, D:A.257 Hydrogen bonds: D:T.126, D:T.126 Salt bridges: D:H.255, D:R.266, D:R.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elkins, J.M. et al., X-Ray Crystal Structure of Escherichia Coli Taurine/Alpha-Ketoglutarate Dioxygenase Complexed to Ferrous Iron and Substrates. Biochemistry (2002)

Release Date

2002-04-26

Peptides

ALPHA-KETOGLUTARATE-DEPENDENT TAURINE DIOXYGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

ALPHA-KETOGLUTARATE-DEPENDENT TAURINE DIOXYGENASE

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